PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.242910.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 407aa    MW: 44324.4 Da    PI: 10.114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.242910.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.2e-05294319630
                     HHHHHHHHHHHHHHHHHHHCTSCC.C CS
             HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                     +++Er RR ri +++ +L++l+P+ +
  Cucsa.242910.1 294 SIAERVRRTRISERMRKLQDLVPNmD 319
                     689********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.204288340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-6291335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00223292320No hitNo description
Gene3DG3DSA:4.10.280.102.4E-5293329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGTNTHQSFQ QPNSALLRFR SAPSSLFADF SHGIDSKRLN PFEGSESERL VSRFGSRADG  60
CNSNDSESPV AGNYSSGLPP HYPRLSSAVN CSSSSSSSSC SSSSSSMCSS LGFLGSNLVR  120
QSSSPAGVLS QLNQNGYGGG SFSRLSGNNN GVEVVSPSSN RLNSQISFSS LVPSSLGMFP  180
QISEQVVGNE KLSNSNNGET QFFTPSGFPF ASWNESSQFS ETFPGIKRDP DSNKKFSSGH  240
QNGEIGNRVH LLSHHLSLPK NVSDVASIEK LLQLQDAVPC RIRAKRGCAT HPRSIAERVR  300
RTRISERMRK LQDLVPNMDK VFLQTKTNIL PFHIQNLTSK LIYVHLLTAN KHGRHVGLSG  360
RLHQRAPEAV QDVKRQPSEL RVCEYAEAVI KSNNVTMRSF CTETIR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136581.10.0PREDICTED: transcription factor bHLH130
TrEMBLA0A0A0LH010.0A0A0A0LH01_CUCSA; Uncharacterized protein
STRINGXP_004136581.10.0(Cucumis sativus)
STRINGXP_004168456.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-67bHLH family protein