PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.242940.1

Common Name

Csa_3G810530, LOC101205014

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 370aa MW: 40917.7 Da PI: 6.0554

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.242940.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.3	1.3e-08	211	258	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Cucsa.242940.1 211 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 258 8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.32E-15	205	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.71E-8	205	262	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-14	207	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.519	207	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-6	211	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-8	213	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MEIKVGTVGG SSPIGRQSDD TGLESLQFCE EIQGLMTIPA ENASSFTALL ELPATQALEL 60 LHSPDSATAA VVNDDSVHHC IKDVPKPYFS AFNCNLTFPT NSGLIERVTK LSVLAKEHSP 120 ETTSSVPLNS SVNLEKVKNE PTTDTDSNPN PLQTLISDPT VENTNQRSAK RKEREKKGRG 180 STKKSKNESN EDAEKLPYVH VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCNKI 240 SGTALVLDEI INHVQSLQRQ VEFLSMRLAA VNPRVDFNIE SILATENEPI LESNFPTMVS 300 PLMWPEIPVN GTRQQYQPQW HFDGSVNHQG WARDEHNHHN FSPPENSLLS YDSSANSASL 360 HSNQLKMEL*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MEIKVGTVGG SSPIGRQSDD TGLESLQFCE EIQGLMTIPA ENASSFTALL ELPATQALEL  60
LHSPDSATAA VVNDDSVHHC IKDVPKPYFS AFNCNLTFPT NSGLIERVTK LSVLAKEHSP  120
ETTSSVPLNS SVNLEKVKNE PTTDTDSNPN PLQTLISDPT VENTNQRSAK RKEREKKGRG  180
STKKSKNESN EDAEKLPYVH VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCNKI  240
SGTALVLDEI INHVQSLQRQ VEFLSMRLAA VNPRVDFNIE SILATENEPI LESNFPTMVS  300
PLMWPEIPVN GTRQQYQPQW HFDGSVNHQG WARDEHNHHN FSPPENSLLS YDSSANSASL  360
HSNQLKMEL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136583.1	0.0	PREDICTED: transcription factor bHLH48
Swissprot	Q3EAI1	1e-95	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A0A0LEI6	0.0	A0A0A0LEI6_CUCSA; Uncharacterized protein
STRING	XP_004136583.1	0.0	(Cucumis sativus)
STRING	XP_004161487.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4985	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-104	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.242940.1
Entrez Gene	101205014

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]