PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.248320.1
Common NameCsa_5G365160, LOC101216722
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 283aa    MW: 31889.3 Da    PI: 7.8443
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.248320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05110129120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  n++ H+
  Cucsa.248320.1 110 FSCSVCTKTFNRYNNMQMHM 129
                     89*****************9 PP
2zf-C2H2171.7e-05195217123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +CgksF  + + ++H +++
  Cucsa.248320.1 195 FSCRKCGKSFAVRGDWRTHEKNC 217
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-5106133No hitNo description
PROSITE profilePS5015710.512110137IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-5110129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.24110132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SMARTSM00355220158190IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.93E-6178215No hitNo description
Gene3DG3DSA:3.30.160.605.6E-6181215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.912195215IPR007087Zinc finger, C2H2
SMARTSM0035534195215IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MQQSWKLSCI SSSESACLEG DEEGEESIFL SLSPPGQRTS FSSKQQQTIY PNSSLQNPNN  60
DNNHENGAAV TVAMHIGPPP ALLSSTPPAV RPLDYWIPTP AQILVGPTQF SCSVCTKTFN  120
RYNNMQMHMW GHGSEYRKGP ESLRGSKAAS SMLRVPCYCC AEGCKNNIEH PRSRPLKDFR  180
TLQTHYKRKH GAKPFSCRKC GKSFAVRGDW RTHEKNCGKL WFCICGSDFK HKRSLKDHVR  240
AFGDGHAPHT VQLCEVEDDN DDDDWESDHH HHHQYLNGSP QTX
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818920.0LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140390.10.0PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-114ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A0A0KQ060.0A0A0A0KQ06_CUCSA; Uncharacterized protein
STRINGXP_004140390.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-113C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]