PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.248540.1

Common Name

Csa_5G375760, LOC101220433

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 436aa MW: 47774.8 Da PI: 9.6041

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.248540.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	194	216	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +++L+ H+ + H Cucsa.248540.1 194 PCPQCGEIFMKPETLELHQTVrH 216 7******************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.621	193	221	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	193	216	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.55E-26	218	426	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.6E-19	219	424	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MTSAMAKPKT QRKLSRHTHE NQKPNPHKAE KPPSWAVVRG ILSCKYLQPQ QQQHQLPRKE 60 KQEQATEENV KNCKKMRCSG SLCSNTKVTH RLEAAASPEV HKKRALTSMG SRNNESSSSN 120 RSTKALLLNE QTTGVLSATS SSLSASSSSS NSSNGASFRG MPFRRFYGCY ECKMVIDPVI 180 GMTRDPSLRA TICPCPQCGE IFMKPETLEL HQTVRHAVSE LGPEDTSKNI VEIIFQSSWL 240 KKQTPICKIE RILKVQNTPK TISKFEEYRD SIKAKATKLP KKYPRCIADG NELLRFHCTT 300 LNCSLGFNGS SNLCSSIPQC NVCSIIKNGF KMAAEATGGD AGKGILTTAT SGKAHDSVGV 360 SSDGGNNKRA MLVCRVIAGR VKKSSEGSME DYDSLAGAAG MYSNLDELYV FSPKAILPCF 420 VVIYGEFVWL PLERC*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MTSAMAKPKT QRKLSRHTHE NQKPNPHKAE KPPSWAVVRG ILSCKYLQPQ QQQHQLPRKE  60
KQEQATEENV KNCKKMRCSG SLCSNTKVTH RLEAAASPEV HKKRALTSMG SRNNESSSSN  120
RSTKALLLNE QTTGVLSATS SSLSASSSSS NSSNGASFRG MPFRRFYGCY ECKMVIDPVI  180
GMTRDPSLRA TICPCPQCGE IFMKPETLEL HQTVRHAVSE LGPEDTSKNI VEIIFQSSWL  240
KKQTPICKIE RILKVQNTPK TISKFEEYRD SIKAKATKLP KKYPRCIADG NELLRFHCTT  300
LNCSLGFNGS SNLCSSIPQC NVCSIIKNGF KMAAEATGGD AGKGILTTAT SGKAHDSVGV  360
SSDGGNNKRA MLVCRVIAGR VKKSSEGSME DYDSLAGAAG MYSNLDELYV FSPKAILPCF  420
VVIYGEFVWL PLERC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681892	0.0	LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140330.1	0.0	PREDICTED: uncharacterized protein LOC101220433
TrEMBL	A0A0A0KN18	0.0	A0A0A0KN18_CUCSA; Uncharacterized protein
STRING	XP_004140330.1	0.0	(Cucumis sativus)
STRING	XP_004161649.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8473	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-102	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Cucsa.248540.1
Entrez Gene	101220433

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]