PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.249390.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 216aa    MW: 24974.6 Da    PI: 9.1799
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.249390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.46e-1921294128
             NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                     G+ F Ptdeel+++yL +kv g  ++   +++ vdiy+ eP ++  ++   + ++++fF++ +kk+++  rk    + ++W+   k ++v+s+++
  Cucsa.249390.1   2 GYTFCPTDEELLCYYLYHKVVGGFVPP-IMLSVVDIYTKEPPQIWqQCGGVDGQDVHFFTCLKKKKSRIVRKVG-PNGATWSGESKATKVFSHNN 94 
                     99*********************9888.789999**********734555588899*****9998765444333.34678*************** PP

             NAM  98 elvglkktLvfy....kgrapkgektdWvmheyrl 128
                     +lvg  k + +     k++ ++ ++ +W+m ey+l
  Cucsa.249390.1  95 TLVGDFKRFHYEnpkmKKDGHHNNNYSWIMYEYTL 129
                     **********99776555666677999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.5391151IPR003441NAC domain
PfamPF023653.4E-132129IPR003441NAC domain
SuperFamilySSF1019414.45E-222151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGYTFCPTDE ELLCYYLYHK VVGGFVPPIM LSVVDIYTKE PPQIWQQCGG VDGQDVHFFT  60
CLKKKKSRIV RKVGPNGATW SGESKATKVF SHNNTLVGDF KRFHYENPKM KKDGHHNNNY  120
SWIMYEYTLH PNLVPEGVVH DSFVLCMLRK KILKQDKRAF SAIKQTSSCL DWPNTTKATT  180
TQLEVHIDDL NTKRRRVEEQ ICIDRNHPNF FQRGT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192196KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011660358.15e-72PREDICTED: uncharacterized protein LOC105436381
TrEMBLA0A0A0LWA51e-140A0A0A0LWA5_CUCSA; Uncharacterized protein
STRINGXP_004170453.11e-144(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.14e-12NAC domain containing protein 103