PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.250070.1
Common NameCsa_2G301510, LOC101215942
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 500aa    MW: 57254.7 Da    PI: 5.3344
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.250070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix932.9e-2945129187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+++e++aL+++r++m++++r+++lk+plWeevs+k+ e g++r++k+Ckek+en+ k++k++k+g+++++  + ++++yf+qlea
  Cucsa.250070.1  45 RWPREETMALLKVRSSMDTAFRDASLKAPLWEEVSRKLGELGYNRNAKKCKEKFENIYKYHKRTKDGRSGKS--NGKNYRYFEQLEA 129
                     8********************************************************************974..4457*******85 PP
2trihelix99.72.4e-31326411187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k+e+ aLi++r++++ +++++  k+plWee+s +m++ g+ r++k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ql+a
  Cucsa.250070.1 326 RWPKEEIDALIQLRTNLQMKYQDNGPKGPLWEEISLAMKKLGYDRNAKRCKEKWENINKYFKRVKESNKKR-PEDSKTCPYFQQLDA 411
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.4E-442104IPR001005SANT/Myb domain
PROSITE profilePS500907.22444102IPR017877Myb-like domain
PfamPF138371.2E-1844130No hitNo description
CDDcd122031.89E-2144109No hitNo description
Gene3DG3DSA:1.10.10.607.4E-5319382IPR009057Homeodomain-like
PROSITE profilePS500907.491319383IPR017877Myb-like domain
SMARTSM007176.8E-4323385IPR001005SANT/Myb domain
PfamPF138372.3E-22325412No hitNo description
CDDcd122032.81E-23325390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MLEISPSPEN SSAAVADANR VFKEEAAAAS AGVLEEADRN WPGNRWPREE TMALLKVRSS  60
MDTAFRDASL KAPLWEEVSR KLGELGYNRN AKKCKEKFEN IYKYHKRTKD GRSGKSNGKN  120
YRYFEQLEAL DNHSLLPSQA DSMEEIPRII PNNVVHNAIP CSVVNPGANF VETTTTSLST  180
STTSSSSKES GGTRKKKRKF VEFFERLMNE VIEKQEKLQK KFVEALEKCE VERLAREEEW  240
KMQELARIKK ERERLNQERS IAAAKDAAVL SFLKVFSEQG GTVQFPENLL LMENLTEKQD  300
DANGERNTST QENINNGNSN QISSSRWPKE EIDALIQLRT NLQMKYQDNG PKGPLWEEIS  360
LAMKKLGYDR NAKRCKEKWE NINKYFKRVK ESNKKRPEDS KTCPYFQQLD ALYKQKSKKV  420
INNPANPNYE LKPEELLMHM MGSQEETHQP ESATDDGEAE NADNQNQEDE GEEGEDEDED  480
YRIVANNNNN NNNNQMQVN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819120.0LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147355.20.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391173e-70TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0A0LK120.0A0A0A0LK12_CUCSA; Uncharacterized protein
STRINGXP_004169667.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-118Trihelix family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]