PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.250310.1

Common Name

Csa_2G297220

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 247aa MW: 28422.8 Da PI: 9.8469

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.250310.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.7	8.5e-32	169	227	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Cucsa.250310.1 169 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHS 227 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.7E-33	154	227	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-28	161	228	IPR003657	WRKY domain
PROSITE profile	PS50811	29.126	164	229	IPR003657	WRKY domain
SMART	SM00774	2.7E-35	169	228	IPR003657	WRKY domain
Pfam	PF03106	1.7E-24	170	226	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGSKSQVMLN PQALLEDHQE VTPNSQMGFF NFPSNLTFFQ LPSIPQTHSP SPSFDPPNFS 60 TSNNNTNNNN NSNNLSETLL SSSILPLKSS ISYELAPQHL LSLQTSTPNL WPWGEIGERL 120 LMNGKRSNNN ENYNNQLGVS KMKMKKMKGR RKVREPRFSF KTMSDVDVLD DGYKWRKYGQ 180 KVVKNTQHPR SYYRCTQDHC RVKKRVERLA EDPRMVITTY EGRHVHSPSH DSEDSEAQTH 240 LNNFFW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-26	161	226	9	74	Probable WRKY transcription factor 4
2lex_A	6e-26	161	226	9	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984038	0.0	GU984038.1 Cucumis sativus WRKY protein (WRKY53) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004148455.1	0.0	PREDICTED: probable WRKY transcription factor 13
TrEMBL	A0A0A0LJY4	0.0	A0A0A0LJY4_CUCSA; Uncharacterized protein
STRING	XP_004148455.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4079	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	4e-54	WRKY DNA-binding protein 13

Link Out ? help Back to Top
Phytozome	Cucsa.250310.1
Entrez Gene	101213135

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Ling J, et al. Genome-wide analysis of WRKY gene family in Cucumis sativus. BMC Genomics, 2011. 12: p. 471 [PMID:21955985] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]