PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.250350.2
Common NameCsa_2G297180
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 149aa    MW: 16060.7 Da    PI: 5.9197
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.250350.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.81.3e-10127148122
                     ---SS-EEEEEEE--TT-SS-E CS
            WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                     +dDgy+WrKYG+K+vk+s++pr
  Cucsa.250350.2 127 MDDGYKWRKYGKKSVKNSPNPR 148
                     69*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-11115148IPR003657WRKY domain
SuperFamilySSF1182901.26E-8120148IPR003657WRKY domain
PROSITE profilePS5081113.563122148IPR003657WRKY domain
PfamPF031062.5E-6128148IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MASFPYEDSN LNPNPNPNNY THFPPILDPA SFFDFELSDF LLFGDDNNIV VDQVASSSPS  60
MTSSEKITSG GVDSGGSSTV IDTGSSVVVS SSGASTTSIR SKNGEKKRKG EMGCRVAFRT  120
KSEQEIMDDG YKWRKYGKKS VKNSPNPR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6564100.0JN656410.1 UNVERIFIED: Cucumis sativus clone 12 WRKY6 transcription factor-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148451.11e-104PREDICTED: probable WRKY transcription factor 51
TrEMBLA0A0A0LM413e-66A0A0A0LM41_CUCSA; Uncharacterized protein
STRINGXP_004148451.11e-103(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-14WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]