PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.251170.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 156aa    MW: 17913.7 Da    PI: 10.1569
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.251170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.31.1e-29958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +rien  nrqvtfskRrng+lKKA+ELSvLCd++va+iifs++gkl+e+ 
  Cucsa.251170.1  9 ERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFG 58
                    69**********************************************95 PP
2K-box622.4e-2182141970
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                     l+e++     +e++kL++++e+Lqr++R++lGe+Le+L+lkeL++Le+qL+k l++ R++K 
  Cucsa.251170.1  82 LDESDV--QIEEVSKLRAKYESLQRSHRNFLGEELEPLTLKELHNLEKQLDKTLSQARQRKV 141
                     444433..368*************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.866161IPR002100Transcription factor, MADS-box
CDDcd002656.56E-41278No hitNo description
SuperFamilySSF554552.35E-33287IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-29323IPR002100Transcription factor, MADS-box
PfamPF003199.5E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.18985155IPR002487Transcription factor, K-box
PfamPF014861.4E-1789141IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGRGKVVLER IENRVNRQVT FSKRRNGLLK KASELSVLCD VDVALIIFST RGKLFEFGST  60
DMNKILERYH QQCYTSGSTT NLDESDVQIE EVSKLRAKYE SLQRSHRNFL GEELEPLTLK  120
ELHNLEKQLD KTLSQARQRK VGIAKFITLI RMISL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-25183183MEF2 CHIMERA
6byy_B8e-25183183MEF2 CHIMERA
6byy_C8e-25183183MEF2 CHIMERA
6byy_D8e-25183183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-96LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-96LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651126.11e-97PREDICTED: MADS-box transcription factor 6-like
SwissprotQ8LLR13e-61MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A1S3AY432e-94A0A1S3AY43_CUCME; MADS-box transcription factor 17-like
STRINGXP_004150309.17e-98(Cucumis sativus)
STRINGXP_004167097.17e-98(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-53AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]