PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.251880.2

Common Name

Csa_3G172930, LOC101210291

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 417aa MW: 45202 Da PI: 6.5128

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.251880.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.8	1.3e-09	231	288	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l +e Cucsa.251880.2 231 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSAE 288 9*******************************************99998877666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.6E-15	227	291	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.898	229	292	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.05E-10	231	282	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-10	231	285	No hit	No description
Pfam	PF00170	1.7E-8	231	285	IPR004827	Basic-leucine zipper domain
CDD	cd14703	9.98E-26	232	281	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MEKDKPQSFS GGFPPPSSRY SGLSPTGSIF NGKSEATSSS MLLPPMPSGG LSDSGQFGHG 60 MPTDSNRFSH DISRMPDNPP RNIGHRRAHS EILTLPDDIC FDNDLGVIGS ADGPSFSDDT 120 EEDLLSMYLD MDKFNSSTAT STIQVGESSS AVGEARSTPT STIGAATSKD DAAVGLKERP 180 RVRHQHSQSM DGLTTIKPEM LVSGSDEASA ADCKKAMSAT KLAELALIDP KRAKRIWANR 240 QSAARSKERK MRYIAELERK VQTLQTEATS LSAQLTLLQR DTNGLSAENN ELKLRLQTME 300 QQVHLQDALN EALKEEIQHL KVLTGQAIPN GGSVTNFASF GAAQPFYPSN QAMHTLLTAQ 360 QFQQLQIHSQ QQQQHFQYHQ LHQLHQQSTG DNKSKGSASS PNPKDNNTSD TSSTTC*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MEKDKPQSFS GGFPPPSSRY SGLSPTGSIF NGKSEATSSS MLLPPMPSGG LSDSGQFGHG  60
MPTDSNRFSH DISRMPDNPP RNIGHRRAHS EILTLPDDIC FDNDLGVIGS ADGPSFSDDT  120
EEDLLSMYLD MDKFNSSTAT STIQVGESSS AVGEARSTPT STIGAATSKD DAAVGLKERP  180
RVRHQHSQSM DGLTTIKPEM LVSGSDEASA ADCKKAMSAT KLAELALIDP KRAKRIWANR  240
QSAARSKERK MRYIAELERK VQTLQTEATS LSAQLTLLQR DTNGLSAENN ELKLRLQTME  300
QQVHLQDALN EALKEEIQHL KVLTGQAIPN GGSVTNFASF GAAQPFYPSN QAMHTLLTAQ  360
QFQQLQIHSQ QQQQHFQYHQ LHQLHQQSTG DNKSKGSASS PNPKDNNTSD TSSTTC*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147651.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-158	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A0A0L894	0.0	A0A0A0L894_CUCSA; Uncharacterized protein
STRING	XP_004160642.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-160	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.251880.2
Entrez Gene	101210291

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]