PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.251920.3

Common Name

Csa_3G172410

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 1072aa MW: 116823 Da PI: 4.2978

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.251920.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00085	14	36	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ +H r H Cucsa.251920.3 14 HVCNKCGWPFPNPHPSAKHRRAH 36 79*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	16	36	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1072 aa Download sequence Send to blast
MEHRDQRQEN HGVHVCNKCG WPFPNPHPSA KHRRAHKRVC GTIEGFKLVE SEANALLTVV 60 SDDDVDDKIS SPKVLGGRCG DDSVGMKTKS KESEDEVFSD AVAEFSESVG PKKPMGDALD 120 SSAAKMVVEE EISSSQTLKD KEVLVERSVI AETTINQSGC EQEKKVNQEF VNIETESKTP 180 LSSSSTENQK DESSVAAETE IDQLGNEQET KVNRELVDLE TSSTSTENQN VENSVVVETE 240 QENKINQLYG NLETNFRHEN SMIPSIDHIN TTTTTGDLYP NDPDTIVTAL EQPQYSLLSP 300 DRICDDEDFD SCKNSTEVAA ASEKIDSDES GPSPKMEETI EISTEPLAHD GTFQLVVDND 360 MSIHSEIPQS VLSAANPQSV VVSDVKPIDL TQVTYDTGKE LESCSSNNLL ETDIIKGEND 420 NVHLPSVSSD LNTLDHPEAL VEELENHKEV KLTSCVVQDP HGGVSGLKDK SKDPIPKGSY 480 FNLQAEPFDQ VASFDTKIME SRQKQEEVVK NVSVDVKGDC SSHSGQEAAE IPIQETNAAQ 540 IKNLLSENEG HSKSQILSDV AIGIGSIPSA SLSSEVESVA PSKNSLDNLS DNVTEVLFSE 600 VERGEVLLQD DENKEGACGR DFEDTVQIHL PVDAHERKDN FVNEKDKFDN LYIAGVEDKK 660 DPPEEKFSMG IDATPEPATT NKENQCIAVA EEIAEESPRK ISLIESIGSR KFDTSLVSDT 720 QESVKENDCS SFVHVVCPTE VNADYGQYHI GDSNSVQDSS VVHAIANREG NLVSVSNETV 780 AGKSDTFQDG SVTQLAGDGV ASETWKDDGA KTDAPKTDVK PQLTSSLLDA SVDAISQTDS 840 LEGNWGSVSV LSTQSDLLAV VDGEVTPQAR AGAEETDLRK ANAAPERQHS DRSDLFEPPS 900 FMTLVEPNGG GIPNSATTEI QTARNREQPN PTSLQAGWFP SYTHVANDSP GRKKNEAIIA 960 KVTNWSAGKP HTALKNLLDD AALENKQKSS PTQKDNLASM IQKDEKPMKK VDSIPKKVDS 1020 IALPNSPTSQ LVNREFANEW NSPARYPSDI RRERRKGRPY WAQFVCCSSV H*

Sequence ? help Back to Top

Protein Sequence Length: 1072 aa Download sequence Send to blast

MEHRDQRQEN HGVHVCNKCG WPFPNPHPSA KHRRAHKRVC GTIEGFKLVE SEANALLTVV  60
SDDDVDDKIS SPKVLGGRCG DDSVGMKTKS KESEDEVFSD AVAEFSESVG PKKPMGDALD  120
SSAAKMVVEE EISSSQTLKD KEVLVERSVI AETTINQSGC EQEKKVNQEF VNIETESKTP  180
LSSSSTENQK DESSVAAETE IDQLGNEQET KVNRELVDLE TSSTSTENQN VENSVVVETE  240
QENKINQLYG NLETNFRHEN SMIPSIDHIN TTTTTGDLYP NDPDTIVTAL EQPQYSLLSP  300
DRICDDEDFD SCKNSTEVAA ASEKIDSDES GPSPKMEETI EISTEPLAHD GTFQLVVDND  360
MSIHSEIPQS VLSAANPQSV VVSDVKPIDL TQVTYDTGKE LESCSSNNLL ETDIIKGEND  420
NVHLPSVSSD LNTLDHPEAL VEELENHKEV KLTSCVVQDP HGGVSGLKDK SKDPIPKGSY  480
FNLQAEPFDQ VASFDTKIME SRQKQEEVVK NVSVDVKGDC SSHSGQEAAE IPIQETNAAQ  540
IKNLLSENEG HSKSQILSDV AIGIGSIPSA SLSSEVESVA PSKNSLDNLS DNVTEVLFSE  600
VERGEVLLQD DENKEGACGR DFEDTVQIHL PVDAHERKDN FVNEKDKFDN LYIAGVEDKK  660
DPPEEKFSMG IDATPEPATT NKENQCIAVA EEIAEESPRK ISLIESIGSR KFDTSLVSDT  720
QESVKENDCS SFVHVVCPTE VNADYGQYHI GDSNSVQDSS VVHAIANREG NLVSVSNETV  780
AGKSDTFQDG SVTQLAGDGV ASETWKDDGA KTDAPKTDVK PQLTSSLLDA SVDAISQTDS  840
LEGNWGSVSV LSTQSDLLAV VDGEVTPQAR AGAEETDLRK ANAAPERQHS DRSDLFEPPS  900
FMTLVEPNGG GIPNSATTEI QTARNREQPN PTSLQAGWFP SYTHVANDSP GRKKNEAIIA  960
KVTNWSAGKP HTALKNLLDD AALENKQKSS PTQKDNLASM IQKDEKPMKK VDSIPKKVDS  1020
IALPNSPTSQ LVNREFANEW NSPARYPSDI RRERRKGRPY WAQFVCCSSV H*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011651106.1	0.0	PREDICTED: uncharacterized protein LOC101215780
TrEMBL	A0A0A0LAY3	0.0	A0A0A0LAY3_CUCSA; Uncharacterized protein
STRING	XP_004147674.1	0.0	(Cucumis sativus)

Link Out ? help Back to Top
Phytozome	Cucsa.251920.3

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]