PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.253300.4

Common Name

Csa_3G153150

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 1108aa MW: 123173 Da PI: 9.0208

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.253300.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28	5.2e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e++++a +++G++ Wk++a+ + +R+ +++ Cucsa.253300.4 46 QWSKDEVEQFYEAYRKYGKD-WKKVAAAVR-NRSTEMV 81 6***************99.*****.98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-9	42	89	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.157	42	95	IPR017884	SANT domain
SMART	SM00717	1.1E-4	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-6	46	81	IPR009057	Homeodomain-like
Pfam	PF00249	5.7E-8	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	2.07E-6	47	81	No hit	No description
Pfam	PF06584	1.1E-31	629	729	IPR033471	DIRP domain
SMART	SM01135	2.7E-56	629	730	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1108 aa Download sequence Send to blast
MAPSRKSRSV NKRFSSANEA SSSKYVEDAS KSKQKKRKFA DLLGPQWSKD EVEQFYEAYR 60 KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLRDSES 120 EQESNEDSGA IRKPQKRLRG KSRSSNLKGS DAHFGDASQS QLLLTNYGCL SLLKKRRSGI 180 KPHAVGKRTP RVPVSYSYDK DGRDKLFSPS KHNSKAKVDD PNDDDVAHEI ALVLTEASQR 240 DGSPQLSQTP NPKIESHVLS PIRNDRMRSE SDMMSTKFRC SEMDEGGCEL SLGSTGADNA 300 DYDLGKSTRE VQRKGKRYYG KKPEVEESMY NHLDDIKEAC SGTEEGQKSG SLRGKLENED 360 LDVKSVRSSF KGPRKRSKKA LFGDECSAFD ALQTLADLSL MMPDTNAETE PPAKVKEENL 420 DVMGKSKMKG SHSVAGSEIS ALKTSKTGKA FGSNVGPISE AEGIQGSNNG NRKRKLKSSP 480 FKISSKDEDN DSRLHDTLKI KAADEAKSSV GKVKRSPHNA GLKSGKISKP LDHHSSSSTD 540 HKREDGDYAL STAQVLSNNP VSLPTKLRSR RKMKLWKSQR DAKISDSTSI DQLNITAQTI 600 DDRQHDLKER HSSCLSWHKL RRWCIFEWFY SAIDFPWFAK CEFVEYLNHV GLGHIPRLTR 660 VEWGVIRSSL GRPRRFSAQF LKEEKQKLNQ YRESVRKHYA ELRAGTREGL PTDLARPLSV 720 GQRVIAIHPK TREIHDGSVL TVDYSRCRVQ FDRPELGVEF VMDIECMPLN PVENMPANLS 780 RHGVTLDKIF GNLNEVKING LLKEAKIEDY MKSTSNDKLE STEGSVYISP STHHINKLIK 840 QAKEVVVSEL KRLNDEVLEN QINGDNLLKD SVNFKKQYAA VLLQLNEVNE QVSSALYCLR 900 QRNTYQGTSP LMFLKPVHDS GDPCSHSQEP GSHVAEIVGS SRAKAQTMID EAMQAILALK 960 KGESNLENIE EAIDFVSNRL TVDDLALPTV RSAAADTSNA APVSQNHFNA CTSNTSTASF 1020 VVGPKSNGSS DKTEMEIPSE LIAHCVATLL MIQKCTERQF PPSDVAQVLD SAVSSLQPCC 1080 PQNLPLYAEI QKCMGIIRSQ ILALIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1108 aa Download sequence Send to blast

MAPSRKSRSV NKRFSSANEA SSSKYVEDAS KSKQKKRKFA DLLGPQWSKD EVEQFYEAYR  60
KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLRDSES  120
EQESNEDSGA IRKPQKRLRG KSRSSNLKGS DAHFGDASQS QLLLTNYGCL SLLKKRRSGI  180
KPHAVGKRTP RVPVSYSYDK DGRDKLFSPS KHNSKAKVDD PNDDDVAHEI ALVLTEASQR  240
DGSPQLSQTP NPKIESHVLS PIRNDRMRSE SDMMSTKFRC SEMDEGGCEL SLGSTGADNA  300
DYDLGKSTRE VQRKGKRYYG KKPEVEESMY NHLDDIKEAC SGTEEGQKSG SLRGKLENED  360
LDVKSVRSSF KGPRKRSKKA LFGDECSAFD ALQTLADLSL MMPDTNAETE PPAKVKEENL  420
DVMGKSKMKG SHSVAGSEIS ALKTSKTGKA FGSNVGPISE AEGIQGSNNG NRKRKLKSSP  480
FKISSKDEDN DSRLHDTLKI KAADEAKSSV GKVKRSPHNA GLKSGKISKP LDHHSSSSTD  540
HKREDGDYAL STAQVLSNNP VSLPTKLRSR RKMKLWKSQR DAKISDSTSI DQLNITAQTI  600
DDRQHDLKER HSSCLSWHKL RRWCIFEWFY SAIDFPWFAK CEFVEYLNHV GLGHIPRLTR  660
VEWGVIRSSL GRPRRFSAQF LKEEKQKLNQ YRESVRKHYA ELRAGTREGL PTDLARPLSV  720
GQRVIAIHPK TREIHDGSVL TVDYSRCRVQ FDRPELGVEF VMDIECMPLN PVENMPANLS  780
RHGVTLDKIF GNLNEVKING LLKEAKIEDY MKSTSNDKLE STEGSVYISP STHHINKLIK  840
QAKEVVVSEL KRLNDEVLEN QINGDNLLKD SVNFKKQYAA VLLQLNEVNE QVSSALYCLR  900
QRNTYQGTSP LMFLKPVHDS GDPCSHSQEP GSHVAEIVGS SRAKAQTMID EAMQAILALK  960
KGESNLENIE EAIDFVSNRL TVDDLALPTV RSAAADTSNA APVSQNHFNA CTSNTSTASF  1020
VVGPKSNGSS DKTEMEIPSE LIAHCVATLL MIQKCTERQF PPSDVAQVLD SAVSSLQPCC  1080
PQNLPLYAEI QKCMGIIRSQ ILALIPT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	1e-177	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	1e-177	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011651046.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X3
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A0A0L571	0.0	A0A0A0L571_CUCSA; Uncharacterized protein
STRING	XP_004159845.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Cucsa.253300.4

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]