PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.253390.1
Common NameCsa_3G152140
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 380aa    MW: 40064 Da    PI: 9.0654
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.253390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-081181027
                    GGTS--TTTTT-SS-SSS CS
         zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                    +rtG Ck+G++Ck++H++
  Cucsa.253390.1  1 MRTGMCKFGASCKYHHPQ 18
                    8***************97 PP
2zf-CCCH36.67.6e-123964227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    ++++C++++++G+Ck+G++CkF+H++
  Cucsa.253390.1 39 GEKECSYYLKNGQCKFGATCKFHHPE 64
                    7899********************96 PP
3zf-CCCH39.31.1e-12202228127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++++rtG Ck+G++C+++H+p
  Cucsa.253390.1 202 PGQPECQYYMRTGDCKFGSSCRYHHPP 228
                     5789*********************97 PP
4zf-CCCH344.9e-11250274327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++C +f++ G Ck+G+ CkF H++
  Cucsa.253390.1 250 APPCTHFMQRGMCKFGPACKFDHSM 274
                     689********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035634118IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-5118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.3119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4220IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-63764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.613765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-63965IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-93964IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-44363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.37201229IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6201228IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-10203228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6205228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5207228IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-7247274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469247275IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-8250273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6251278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5252275IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MRTGMCKFGA SCKYHHPQQE RGSLSPVSLN FYGYPLRPGE KECSYYLKNG QCKFGATCKF  60
HHPEPAGLQF PAPSPVQVAP IAGQVPAPSV YPPVQSPSAH SSQQYGVILA RPSLLSNPYV  120
PGPYGPMLVS PGVVQFPSWS PYPAPMSPVA SPSAQPSVGS GPLYGMAHVS PSASGFAGSY  180
QPMPSTGPSS TSQKEHSFPE RPGQPECQYY MRTGDCKFGS SCRYHHPPEL VTSRPSVVLS  240
QLGLPLRPGA PPCTHFMQRG MCKFGPACKF DHSMDRLSYS PSASSLADMP VAPYPVGSVA  300
GTLAPSSSSS ELRPEHFSGS RKDSNPSRMS SSMSTSSGLV SSTTSRTEMH SLSSVQRSSQ  360
SSGPSVGSTS STTSAEGRT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134198.10.0PREDICTED: zinc finger CCCH domain-containing protein 34
SwissprotQ5NAW21e-112C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A0A0L8Z30.0A0A0A0L8Z3_CUCSA; Uncharacterized protein
STRINGXP_004134198.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.16e-99C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  4. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  5. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  6. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]