PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.255320.1

Common Name

Csa_3G135630, LOC101213488

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 134aa MW: 15105.5 Da PI: 5.988

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.255320.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62	1.3e-19	22	73	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd + r r++lg+f taeeAa+a+++a+ +++g+ Cucsa.255320.1 22 RYRGVRRRP-WGKFAAEIRDSR----RqgVRIWLGTFNTAEEAARAYDRAAYNMRGH 73 59*****.******42....124************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.9E-31	22	82	IPR001471	AP2/ERF domain
CDD	cd00018	7.45E-18	22	81	No hit	No description
Pfam	PF00847	3.1E-15	22	73	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.9E-23	22	81	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.538	22	80	IPR001471	AP2/ERF domain
SMART	SM00380	7.3E-34	22	86	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	23	34	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	46	62	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MDESGGRGRG YGDDSTGSRE IRYRGVRRRP WGKFAAEIRD SRRQGVRIWL GTFNTAEEAA 60 RAYDRAAYNM RGHLAILNFP NEYPLTRGGA YSSGSSSSSS MSMRQNEVIE FEYLDDKVLE 120 DLLDYGEESD KRS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-36	1	118	1	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	1e-153	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	1e-153	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134413.1	4e-92	PREDICTED: ethylene-responsive transcription factor 14
Swissprot	Q9LTC5	1e-42	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A0A0L9V5	1e-90	A0A0A0L9V5_CUCSA; Uncharacterized protein
STRING	XP_004170780.1	2e-91	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	1e-32	ERF family protein

Link Out ? help Back to Top
Phytozome	Cucsa.255320.1
Entrez Gene	101213488

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]