PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.256700.1
Common NameCsa_3G129630
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 468aa    MW: 52394.1 Da    PI: 6.7972
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.256700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.45.3e-34181082101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d++++e++sw+++++sfvv+++ efa+ +Lp++Fkhsnf+SF+RQLn+YgF+k+++e+         weF+++ F k++k+ll++
  Cucsa.256700.1  18 FLIKTYDMVDDSSTDEIVSWTSSKKSFVVWNPPEFARLLLPTFFKHSNFSSFIRQLNTYGFRKIDSEK---------WEFANEDFIKDQKHLLKN 103
                     9****************************************************************998.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  Cucsa.256700.1 104 IHRRK 108
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.84E-3514107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-3614107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.6E-5914107IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEAAAAGGGT GGAGPAPFLI KTYDMVDDSS TDEIVSWTSS KKSFVVWNPP EFARLLLPTF  60
FKHSNFSSFI RQLNTYGFRK IDSEKWEFAN EDFIKDQKHL LKNIHRRKPI HSHSNPQGSH  120
IDPERAAFED EIERLAREKT TLETNISRFK QQKSTAKLQL QDLTVKVESM EKRQKNLLAF  180
LEKAVQNPSF VEHLARRVES MDFTAFKKKR RLPSADLSQP VVENSFLDNH SSSRSESGNI  240
FHQDFSQKLR LETSCASDIN LISRSTQSSN EEGGSSQRQL SKFDTRAVQE NIHFAVETLD  300
LSDTGTSFIL RRDSSLSGKS HNDDSPCLHS LQPSVSSKED GESHISCQLN LTLASSSLRI  360
NDTACSVRMP QLGQNVRKFP DSKVNSNGKE SDVRLFTKNI NLDEGSTPVC PQETSNNNHG  420
PPAASIRAND VFWERLLTER PGCPESEEAS SNYRANPFKE PDDGTVH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-21910717129Heat shock factor protein 1
5d5v_B5e-21910717129Heat shock factor protein 1
5d5v_D5e-21910717129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206210KKKRR
2206211KKKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134371.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ94BZ51e-138HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A0A0L9B50.0A0A0A0L9B5_CUCSA; Uncharacterized protein
STRINGXP_008438315.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-140HSF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]