PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.257390.1
Common NameCsa_3G126890, LOC105434822
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 103aa    MW: 11554.5 Da    PI: 9.3484
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.257390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.3e-1222784297
                    TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS
              B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97
                    +g++W++ + + +++g+ + +k W++Fv++n Lk+gD +vF+l   + s  +++v+++
  Cucsa.257390.1 22 RGKKWKIDY-HGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLeCSsSILKFRVQIL 78
                    69*******.55555568889*********************6535446666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100178.21E-10179No hitNo description
PROSITE profilePS5086312.421181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-121678IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-101977IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-92275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
VLPAKFHSIL PAIVIPAVLL CRGKKWKIDY HGNRRGKALD SKQWRKFVND NCLKSGDAIV  60
FELLECSSSI LKFRVQILSG DIPLELHDKF SGETKETPIH LD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-149LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-149LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650806.13e-70PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A0A0L3V36e-69A0A0A0L3V3_CUCSA; Uncharacterized protein
STRINGVIT_15s0024g00930.t017e-30(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]