PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.257800.2

Common Name

Csa_3G124990, LOC101211224

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GRF

Protein Properties

Length: 464aa MW: 50661.6 Da PI: 10.0845

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.257800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.5	5.4e-24	115	159	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++ +k+CErH+hrgr+rsrk++e+ Cucsa.257800.2 115 DPEPGRCRRTDGKKWRCSRNTVPHQKYCERHMHRGRQRSRKPVEA 159 79****************************************997 PP
2	WRC	63.6	3e-20	352	391	2	41
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 epgrCrRtDGKkWRC+r+v++++k+C H+hrg+++ k Cucsa.257800.2 352 LEPGRCRRTDGKKWRCRRDVIPDQKYCALHMHRGSKKHLK 391 59********************************887655 PP
3	QLQ	47.6	5.2e-17	52	88	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s +Ta Qlq+L++Q+l+ KyLaa++ vP +Ll++i+k Cucsa.257800.2 52 SILTAGQLQELEQQVLIHKYLAAGVRVPTHLLVPIWK 88 579********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.7E-8	52	88	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.498	53	88	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.5E-10	54	87	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.432	115	159	IPR014977	WRC domain
Pfam	PF08879	2.1E-20	116	158	IPR014977	WRC domain
PROSITE profile	PS51667	20.514	351	395	IPR014977	WRC domain
Pfam	PF08879	8.1E-18	353	391	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MMMEVKKEVN QSENDEVSTP VLPSINLGLQ IGTNSAGSRN ERNSIVRRSR ESILTAGQLQ 60 ELEQQVLIHK YLAAGVRVPT HLLVPIWKSA ARTLGSNINV IGFSPVGFDY RSMMDPEPGR 120 CRRTDGKKWR CSRNTVPHQK YCERHMHRGR QRSRKPVEAS ENESPSKRIQ LNIPDRDARC 180 TLDVPTSTIC GNIKTKNHSS CNFTTAIPFL PVEAAVPGPK TVSDTRTKSV TETITGSMHG 240 TAAIVTSCAD ATKTNRMVPA SAPNTTATCI TTVPSVNPNA TNSISTGYIA DLKDICNMNF 300 RDNCSKSRNN AGRNDPNIQK IASPSLGFSP NSVLQVPGCS SSLCDSKINL ELEPGRCRRT 360 DGKKWRCRRD VIPDQKYCAL HMHRGSKKHL KPIQNAPVLA PCVASYGTML PLVTTPLTKL 420 EPATPNTNLS MSIQVDNKQR PTKARSNASS SSETTITDTT ITG*

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MMMEVKKEVN QSENDEVSTP VLPSINLGLQ IGTNSAGSRN ERNSIVRRSR ESILTAGQLQ  60
ELEQQVLIHK YLAAGVRVPT HLLVPIWKSA ARTLGSNINV IGFSPVGFDY RSMMDPEPGR  120
CRRTDGKKWR CSRNTVPHQK YCERHMHRGR QRSRKPVEAS ENESPSKRIQ LNIPDRDARC  180
TLDVPTSTIC GNIKTKNHSS CNFTTAIPFL PVEAAVPGPK TVSDTRTKSV TETITGSMHG  240
TAAIVTSCAD ATKTNRMVPA SAPNTTATCI TTVPSVNPNA TNSISTGYIA DLKDICNMNF  300
RDNCSKSRNN AGRNDPNIQK IASPSLGFSP NSVLQVPGCS SSLCDSKINL ELEPGRCRRT  360
DGKKWRCRRD VIPDQKYCAL HMHRGSKKHL KPIQNAPVLA PCVASYGTML PLVTTPLTKL  420
EPATPNTNLS MSIQVDNKQR PTKARSNASS SSETTITDTT ITG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011650785.1	0.0	PREDICTED: growth-regulating factor 9 isoform X2
TrEMBL	A0A0A0L916	0.0	A0A0A0L916_CUCSA; Uncharacterized protein
STRING	XP_004133902.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	3e-47	growth-regulating factor 9

Link Out ? help Back to Top
Phytozome	Cucsa.257800.2
Entrez Gene	101211224

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]