PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.258900.1
Common NameCsa_3G120390, LOC101214687
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 213aa    MW: 24039.7 Da    PI: 7.1476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.258900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.5e-2077126255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdp     r +r++lg+++taeeAa  +++a+ +l+g
  Cucsa.258900.1  77 KFRGVRRRP-WGKWAAEIRDPL----RrTRVWLGTYDTAEEAAVVYDQAAVRLRG 126
                     89*******.**********73....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.0E-491189IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.103.2E-3076134IPR001471AP2/ERF domain
PROSITE profilePS5103223.44677134IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-2277134IPR016177DNA-binding domain
CDDcd000188.03E-3077133No hitNo description
SMARTSM003803.4E-3777140IPR001471AP2/ERF domain
PfamPF008471.3E-1277126IPR001471AP2/ERF domain
PRINTSPR003671.1E-107889IPR001471AP2/ERF domain
PRINTSPR003671.1E-10100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
ETRTVTHKPA AETKLVRISY TDADATDSSS GEDEEPILVR HVKRHVTEIR LLTTDCSKKA  60
PPKSRANPPR NSESHRKFRG VRRRPWGKWA AEIRDPLRRT RVWLGTYDTA EEAAVVYDQA  120
AVRLRGPSAL TNFVAETPHS ETTLVTYLTP PPPENQSAAA AVSETKESRS ICSPTSVLRL  180
EDENWRAIDH YLSEESGLED EFNWLYDRNS NK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-21751391273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004133833.21e-152PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotQ9SUE32e-40CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A0A0L3971e-150A0A0A0L397_CUCSA; Uncharacterized protein
STRINGXP_004133833.11e-151(Cucumis sativus)
STRINGXP_004155156.11e-151(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-35cytokinin response factor 4
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  6. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]