PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.258940.1
Common NameCsa_3G119850, LOC101213720
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 427aa    MW: 45126.4 Da    PI: 9.4996
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.258940.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.11.6e-22290352163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     ekelkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN a ++e+++l+++++klk+e+
  Cucsa.258940.1 290 EKELKRERRKQSNRESARRSRLRKQAETEELARKVDSLTAENVAIRSEISRLSENSDKLKKEN 352
                     89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.6E-34198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-22134272No hitNo description
Gene3DG3DSA:1.20.5.1707.3E-16284350No hitNo description
SMARTSM003384.2E-21290354IPR004827Basic-leucine zipper domain
PfamPF001705.0E-21290352IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.173292355IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.75E-10293349No hitNo description
CDDcd147022.20E-20295346No hitNo description
PROSITE patternPS000360297312IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGTSEEAKSV KTEKPSSPTP PDQNGVPNSA SIHVFPDWAA MQAYYGPRVA VPPYYNSAVA  60
SGHAPHPYMW GPPQMIPPYG TPYAAIYSHG GVYAHPAVSV GPHSHAPGVP SSPAQAATPL  120
SIETPSKVSG NSSQGLMKKL KGFDGLAMSI GNVSTESAEG GAEHGQSESM ETEGSSDGSD  180
GTTAGANHNK RKRSREGTPT TGMTPPPSGK DAKIEPQASP VTAAEMNESS NKLLGTTKAT  240
NATGKLGSVI SPGMSTALEL RNSSSMNAMT SPTTVPPCSV LPSEVWLQNE KELKRERRKQ  300
SNRESARRSR LRKQAETEEL ARKVDSLTAE NVAIRSEISR LSENSDKLKK ENSTLMEKLK  360
NAQSGRSEAL DMNEKKMQQP VSAEMKGPVN KSISEESMIC KKNSSSGAKL RQLLDTSPRA  420
DAVAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306312RRSRLRK
2306313RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-113LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-113LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650712.10.0PREDICTED: common plant regulatory factor 1-like isoform X1
RefseqXP_011650713.10.0PREDICTED: common plant regulatory factor 1-like isoform X1
SwissprotQ990891e-128CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A0A0L3910.0A0A0A0L391_CUCSA; Uncharacterized protein
STRINGXP_004133829.10.0(Cucumis sativus)
STRINGXP_004155848.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-104G-box binding factor 3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]