PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.258940.9

Common Name

Csa_3G119850, LOC101213720

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 420aa MW: 44387.6 Da PI: 9.4996

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.258940.9	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	71.2	1.6e-22	283	345	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ekelkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN a ++e+++l+++++klk+e+ Cucsa.258940.9 283 EKELKRERRKQSNRESARRSRLRKQAETEELARKVDSLTAENVAIRSEISRLSENSDKLKKEN 345 89***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	2.5E-34	1	98	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	2.0E-24	133	265	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.0E-16	277	343	No hit	No description
Pfam	PF00170	4.9E-21	283	345	IPR004827	Basic-leucine zipper domain
SMART	SM00338	4.2E-21	283	347	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.173	285	348	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.88E-10	286	342	No hit	No description
CDD	cd14702	8.46E-21	288	339	No hit	No description
PROSITE pattern	PS00036	0	290	305	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MGTSEEAKSV KTEKPSSPTP PDQNGVPNSA SIHVFPDWAA MQAYYGPRVA VPPYYNSAVA 60 SGHAPHPYMW GPPQMIPPYG TPYAAIYSHG GVYAHPAVSV GPHSHAPGVP SSPAAATPLS 120 IETPSKVSGN SSQGLMKKLK GFDGLAMSIG NVSTESAEGG AEHGQSESME TEGSSDGSDG 180 TTAGANHNKR KRSREGTPTT GGKDAKIEPQ ASPVTAAEMN ESSNKLLGTT KATNATGKLG 240 SVISPGMSTA LELRNSSSMN AMTSPTTVPP CSVLPSEVWL QNEKELKRER RKQSNRESAR 300 RSRLRKQAET EELARKVDSL TAENVAIRSE ISRLSENSDK LKKENSTLME KLKNAQSGRS 360 EALDMNEKKM QQPVSAEMKG PVNKSISEES MICKKNSSSG AKLRQLLDTS PRADAVAAS*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MGTSEEAKSV KTEKPSSPTP PDQNGVPNSA SIHVFPDWAA MQAYYGPRVA VPPYYNSAVA  60
SGHAPHPYMW GPPQMIPPYG TPYAAIYSHG GVYAHPAVSV GPHSHAPGVP SSPAAATPLS  120
IETPSKVSGN SSQGLMKKLK GFDGLAMSIG NVSTESAEGG AEHGQSESME TEGSSDGSDG  180
TTAGANHNKR KRSREGTPTT GGKDAKIEPQ ASPVTAAEMN ESSNKLLGTT KATNATGKLG  240
SVISPGMSTA LELRNSSSMN AMTSPTTVPP CSVLPSEVWL QNEKELKRER RKQSNRESAR  300
RSRLRKQAET EELARKVDSL TAENVAIRSE ISRLSENSDK LKKENSTLME KLKNAQSGRS  360
EALDMNEKKM QQPVSAEMKG PVNKSISEES MICKKNSSSG AKLRQLLDTS PRADAVAAS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	299	305	RRSRLRK
2	299	306	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00318	DAP	Transfer from AT2G46270	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	1e-113	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	1e-113	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004133829.1	0.0	PREDICTED: common plant regulatory factor 1-like isoform X2
Swissprot	Q99089	1e-131	CPRF1_PETCR; Common plant regulatory factor 1
TrEMBL	A0A0A0L391	0.0	A0A0A0L391_CUCSA; Uncharacterized protein
STRING	XP_004133829.1	0.0	(Cucumis sativus)
STRING	XP_004155848.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	1e-111	G-box binding factor 3

Link Out ? help Back to Top
Phytozome	Cucsa.258940.9
Entrez Gene	101213720

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Feldbrügge M,Hahlbrock K,Weisshaar B The transcriptional regulator CPRF1: expression analysis and gene structure. Mol. Gen. Genet., 1996. 251(6): p. 619-27 [PMID:8757392]