PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.259110.1
Common NameCsa_3G119700, LOC101207215
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 338aa    MW: 38447.2 Da    PI: 4.4443
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.259110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.6e-29128189159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     l+Dgy+WrKYGqK+++g++fpr YYrCt++   gC ++k+v++s++dp+++e+tY+g+H+++
  Cucsa.259110.1 128 LNDGYSWRKYGQKDIHGANFPRCYYRCTHRnvrGCLATKQVQKSDNDPNIFEVTYRGRHTCN 189
                     58***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.837123191IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-28123190IPR003657WRKY domain
SuperFamilySSF1182901.01E-25126190IPR003657WRKY domain
SMARTSM007742.1E-39128190IPR003657WRKY domain
PfamPF031061.8E-26129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEIMEHNSLI SELTQGKELA LQLRTHLHPS SSPEQACLFL TEMIQSSFEK ALLLLNFNSS  60
NLKTHQISSL DEQEGEEEEE EEEEVEESST KKKRKISRSR DALKKRKLLP RWTEEIKVCN  120
GSAPEGPLND GYSWRKYGQK DIHGANFPRC YYRCTHRNVR GCLATKQVQK SDNDPNIFEV  180
TYRGRHTCNQ SSNLGSTSIS SQNQIYEETN QIQQKPNSEI WFDFGDINFN LKTEDFDQVF  240
PPFSFSYEEP IMNPTFIPGE DLTAAVSSPA TDTAWDWSGY DGGVQRVQSS EQSAVTEIVS  300
ATTSVTNSPI YNGDWDFSLD NIDFDHNFPF DSLDFIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-17128188868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192106KRKISRSRDALKKRK
293107RKISRSRDALKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0368950.0FJ036895.1 Cucumis sativus clone CU16D01 putative WRKY transcription factor 30 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650695.10.0PREDICTED: probable WRKY transcription factor 46
TrEMBLA0A0A0L7720.0A0A0A0L772_CUCSA; Uncharacterized protein
STRINGXP_008437915.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.27e-41WRKY family protein
Publications ? help Back to Top
  1. Xia XJ, et al.
    Reactive oxygen species are involved in brassinosteroid-induced stress tolerance in cucumber.
    Plant Physiol., 2009. 150(2): p. 801-14
    [PMID:19386805]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]