PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.259710.2

Common Name

Csa_3G118080, LOC101222132

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 200aa MW: 22072 Da PI: 4.7569

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.259710.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.6e-19	141	194	2	55
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 rk+ +++keq +Lee F+++++++ +++ LAk+l+Lt rqV vWFqNrRa+e Cucsa.259710.2 141 RKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARE 194 788899**********************************************97 PP
2	HD-ZIP_I/II	81.8	1e-26	141	194	1	54
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRAR Cucsa.259710.2 141 RKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARE 194 69***************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	1.2E-29	1	96	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	4.0E-20	124	191	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.55E-19	127	194	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	137	197	IPR001356	Homeobox domain
SMART	SM00389	1.6E-12	139	198	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	141	194	IPR001356	Homeobox domain
CDD	cd00086	1.88E-16	141	194	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MGGRDDDVGL TLSLGFGVTT QSTHMQRPSS MHNHHLRKTH WNELFQFSDR NADSRSFLRG 60 IDVNRLPTGV DGEEENGVSS PNSTISSISG KRSEREAAGD EAEAEAEAEA EAEAEAEAER 120 ASCSRGSDDE DGGGGDGDAS RKKLRLSKEQ SMVLEETFKE HNTLNPKQKL ALAKQLNLTP 180 RQVEVWFQNR RAREMVEWD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	145	SRKKLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	1e-140	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	1e-140	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004133780.2	1e-140	PREDICTED: homeobox-leucine zipper protein HAT3-like
Swissprot	P46602	1e-59	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A0A0L3P1	1e-138	A0A0A0L3P1_CUCSA; Uncharacterized protein
STRING	XP_004155192.1	1e-139	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	8e-26	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Cucsa.259710.2
Entrez Gene	101222132

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]