PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.260030.1
Common NameCsa_3G116730, LOC101220335
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 158aa    MW: 17722.7 Da    PI: 9.9633
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.260030.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-1990141256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +++GVr+++ +g+++AeIrdps+ g  +r++lg++ ta++Aa a+++a+ +++g+
  Cucsa.260030.1  90 QFRGVRRRP-WGKYAAEIRDPSKKG--ARIWLGTYHTAQDAALAYDRAAFQMRGA 141
                     58*******.**********97744..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.3E-3290149IPR001471AP2/ERF domain
CDDcd000183.44E-2890149No hitNo description
PROSITE profilePS5103223.15690148IPR001471AP2/ERF domain
SMARTSM003801.4E-3590154IPR001471AP2/ERF domain
PfamPF008471.0E-1291140IPR001471AP2/ERF domain
PRINTSPR003675.4E-1391102IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2291149IPR016177DNA-binding domain
PRINTSPR003675.4E-13130150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MLSSSSSSLE GSSSDLFHLE QIRRHLLEDD LGKGSTHNNV EDGIIRYDIS RSGAGWEMSN  60
NNNNMVDQMS SIIIRDNPEE KSQPRPRGLQ FRGVRRRPWG KYAAEIRDPS KKGARIWLGT  120
YHTAQDAALA YDRAAFQMRG AKAKLNFPHI ISSNNYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3087153268ATERF1
3gcc_A4e-3087153268ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134277.11e-113PREDICTED: ethylene-responsive transcription factor 1
TrEMBLA0A0A0L8931e-112A0A0A0L893_CUCSA; Uncharacterized protein
STRINGXP_004155267.11e-113(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-30ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]