PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.260400.1
Common NameCsa_3G113370, LOC101216775
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 435aa    MW: 48964.6 Da    PI: 6.8453
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.260400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.52.8e-49491742128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                     +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++
  Cucsa.260400.1  49 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTED 142
                     79***************************.89***************8778899***************************************** PP

             NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +glkktLvfy+g+apkg +t+W+m+eyrl
  Cucsa.260400.1 143 FRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 174
                     ******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-5546194IPR003441NAC domain
PROSITE profilePS5100555.26448195IPR003441NAC domain
PfamPF023659.8E-2550174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MAIAAAARSS SARMRQEEIS SNKTNNNNNN NCEDHDDIDH DQHEHDVVMP GFRFHPTEEE  60
LVEFYLRRKV EGKRFNVELI TFLDLYRYDP WELPALAAIG EKEWFFYVPR DRKYRNGDRP  120
NRVTTSGYWK ATGADRMIRT EDFRSIGLKK TLVFYSGKAP KGIRTSWIMN EYRLPHHETE  180
RYQKAEISLC RVYKRAGVED HPSLPRSLPS RASSSRMTSS KNNLLPGGGS VNVVQTSSSS  240
TDKFPTSFES QFHPHQLQIG SGVEATAADA SATSSCEEVT TVLGLSKQNP FPTSPLINMA  300
ATSSLQIPAS ASTTPNCMEE DDHQSIILHK QQQQQQQQQL LPSSSSLILP TYTSFFSPSS  360
NNSLDDLQKL IHYQQQQPPI SASPTTIINS LPSQYYQPTP PPPPQQLALN TLPVVFSDRL  420
WDWNSIQDAA NPFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-545019519165NO APICAL MERISTEM PROTEIN
1ut4_B1e-545019519165NO APICAL MERISTEM PROTEIN
1ut7_A1e-545019519165NO APICAL MERISTEM PROTEIN
1ut7_B1e-545019519165NO APICAL MERISTEM PROTEIN
4dul_A1e-545019519165NAC domain-containing protein 19
4dul_B1e-545019519165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818580.0LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650588.10.0PREDICTED: NAC domain-containing protein 55
TrEMBLA0A0A0L2S00.0A0A0A0L2S0_CUCSA; Uncharacterized protein
STRINGXP_008452197.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72033146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-106NAC domain containing protein 35
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]