PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.261750.1

Common Name

Csa_5G065660, LOC101222713

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 118aa MW: 13583.1 Da PI: 6.5406

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.261750.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.7e-18	66	117	2	53
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 rk+ ++tkeq + Le+ F++n++++ +++e LA+ l+L+ rq+ vWFqNrRa Cucsa.261750.1 66 RKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQIEVWFQNRRA 117 78889**********************************************8 PP
2	HD-ZIP_I/II	74.7	1.7e-24	66	117	1	52
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA 52 +kk+rl+keq++lLE+sF+++++L+p++K++la+ L+l+prq++vWFqnrRA Cucsa.261750.1 66 RKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQIEVWFQNRRA 117 69*************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.8E-18	47	117	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-17	50	116	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.86	62	118	IPR001356	Homeobox domain
SMART	SM00389	1.6E-9	64	118	IPR001356	Homeobox domain
CDD	cd00086	6.13E-16	65	117	No hit	No description
Pfam	PF00046	1.9E-15	66	117	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MAILPTSTSR LDLSISVPGF NSFSSALPPS VGRDLDMNKA PDEEEWMMGT MEEDEEINNN 60 GSNNPRKKLR LTKEQSHLLE QSFRQNHTLN PKQKETLAEV LKLKPRQIEV WFQNRRAX

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681905	4e-83	LN681905.1 Cucumis melo genomic scaffold, anchoredscaffold00033.
GenBank	LN713264	4e-83	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011654500.1	4e-81	PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1
Swissprot	Q8S9N6	8e-38	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A0A0KJE2	9e-80	A0A0A0KJE2_CUCSA; Uncharacterized protein
STRING	XP_004142329.1	1e-79	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9506	30	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	3e-40	homeobox-leucine zipper protein 17

Link Out ? help Back to Top
Phytozome	Cucsa.261750.1
Entrez Gene	101222713

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]