PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.272530.1

Common Name

Csa_4G664590, LOC101219733

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

SBP

Protein Properties

Length: 1032aa MW: 114643 Da PI: 8.5348

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.272530.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.8	2.1e-40	109	186	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe hsk++++lv++++qrfCqqCsrfh lsefD++krsCrrrLa+hn rrrk+q+ Cucsa.272530.1 109 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQP 186 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.3E-33	106	171	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.317	107	184	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.76E-37	108	188	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.3E-29	110	183	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1032 aa Download sequence Send to blast
MDDPGAQVVP PIFIHQSLTS RYTDLPSIPK KRPLSYHQGQ LHPHTWNPKA WDWDSSKFLT 60 KPSNLNNTTL DDHDDTLRLN LGGRYVEDPV SKPPKKVRPG SPASVTYPMC QVDNCKEDLS 120 NAKDYHRRHK VCELHSKSSK ALVAKQMQRF CQQCSRFHPL SEFDDGKRSC RRRLAGHNWR 180 RRKTQPEDVT SRLTRPGSRG PPSTGNLDIV SLLTVLARAQ GKNEDQSVKS LLSANSDQLI 240 QILNKINSLP LPADLAAKLP NLENFKGKAP PQSSLQHQNK LNGNPSSPST MDLLTVLSAT 300 LAASAPDALA MLSQKSSVSS DSEKTRSSCP SGSDLQNRPL ELPSVGGERS STSYQSPMED 360 SDGQVQGTRV GLPLQLFGSS PEHDAPPNLT ASRKYFSSDS SNPIEERSPS SSPPLLQTLF 420 PVQSTEETTS NGKMPIRKEV NGVEVRKPPS SNIPFELFRE LDGARPNSFQ TIHYQAGYTS 480 SGSDHSPSSL NSDAQDRTGR ISFKLFEKDP SQFPGTLRTQ IYNWLSNCPS EMESYIRPGC 540 VVLSVYMSMS SIAWERLEEN LVLHLKSLVH SEELDFWRSG RFLVYTGRQL ASHKDGKIHL 600 NKSSKAWSNP ELTSVSPLAV VSGQKTSFLL RGRNLKIPGT RIHCTSMGGY ISEEVMGLSS 660 LGLSSEGIYD EIHSRSFKVG DVSPTTLGRC FIEVENGFRG NSFPVIIADA TICRELRHLE 720 SDFDEFKVPD SSLESHSSVS SQPRLRDEIL QFLNELGWLF QRERFSYELD NPDFLIRRFR 780 FLLTFSAERD FCALVKTLLD ILAKKCLITD GLSMKSLEMI SELQLLNRSV KRRCRQMVDL 840 LVHYHVSGVG DSEKKYLFPP NFIGPGGITP LHLAASMADA ENLVDALTND PLEIGLECWS 900 SQLDESGRSP QAYALMRGNH NCNELVKRKL ADRKNGQVSV RIGNEIEQLE VSSGERGRVK 960 GRSCSRCAVV AARCNRRVPG SGTHRLLHRP YIHSMLAIAA VCVCVCLFLR GSPDIGLVAP 1020 FKWENLGYGT I*

Sequence ? help Back to Top

Protein Sequence Length: 1032 aa Download sequence Send to blast

MDDPGAQVVP PIFIHQSLTS RYTDLPSIPK KRPLSYHQGQ LHPHTWNPKA WDWDSSKFLT  60
KPSNLNNTTL DDHDDTLRLN LGGRYVEDPV SKPPKKVRPG SPASVTYPMC QVDNCKEDLS  120
NAKDYHRRHK VCELHSKSSK ALVAKQMQRF CQQCSRFHPL SEFDDGKRSC RRRLAGHNWR  180
RRKTQPEDVT SRLTRPGSRG PPSTGNLDIV SLLTVLARAQ GKNEDQSVKS LLSANSDQLI  240
QILNKINSLP LPADLAAKLP NLENFKGKAP PQSSLQHQNK LNGNPSSPST MDLLTVLSAT  300
LAASAPDALA MLSQKSSVSS DSEKTRSSCP SGSDLQNRPL ELPSVGGERS STSYQSPMED  360
SDGQVQGTRV GLPLQLFGSS PEHDAPPNLT ASRKYFSSDS SNPIEERSPS SSPPLLQTLF  420
PVQSTEETTS NGKMPIRKEV NGVEVRKPPS SNIPFELFRE LDGARPNSFQ TIHYQAGYTS  480
SGSDHSPSSL NSDAQDRTGR ISFKLFEKDP SQFPGTLRTQ IYNWLSNCPS EMESYIRPGC  540
VVLSVYMSMS SIAWERLEEN LVLHLKSLVH SEELDFWRSG RFLVYTGRQL ASHKDGKIHL  600
NKSSKAWSNP ELTSVSPLAV VSGQKTSFLL RGRNLKIPGT RIHCTSMGGY ISEEVMGLSS  660
LGLSSEGIYD EIHSRSFKVG DVSPTTLGRC FIEVENGFRG NSFPVIIADA TICRELRHLE  720
SDFDEFKVPD SSLESHSSVS SQPRLRDEIL QFLNELGWLF QRERFSYELD NPDFLIRRFR  780
FLLTFSAERD FCALVKTLLD ILAKKCLITD GLSMKSLEMI SELQLLNRSV KRRCRQMVDL  840
LVHYHVSGVG DSEKKYLFPP NFIGPGGITP LHLAASMADA ENLVDALTND PLEIGLECWS  900
SQLDESGRSP QAYALMRGNH NCNELVKRKL ADRKNGQVSV RIGNEIEQLE VSSGERGRVK  960
GRSCSRCAVV AARCNRRVPG SGTHRLLHRP YIHSMLAIAA VCVCVCLFLR GSPDIGLVAP  1020
FKWENLGYGT I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-30	100	183	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681861	0.0	LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004145609.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A0A0L4Q1	0.0	A0A0A0L4Q1_CUCSA; Uncharacterized protein
STRING	XP_004172805.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9694	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	Cucsa.272530.1
Entrez Gene	101219733

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]