PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.273100.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 375aa    MW: 42590.1 Da    PI: 4.8867
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.273100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000761636323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ C+ksFs+   L  H+r+H
  Cucsa.273100.1 16 CKLCNKSFSNGKVLGGHMRSH 36
                    *******************99 PP
2zf-C2H214.79e-0584104323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C++Cgk F ++  L  H+r H
  Cucsa.273100.1  84 CKICGKGFESSKALFGHMRHH 104
                     *******************99 PP
3zf-C2H216.52.3e-05114135223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C+ C+k F +  +L++H+++H
  Cucsa.273100.1 114 RCKECNKEFENLKSLTSHMKSH 135
                     6********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.1E-5837IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.35E-61039No hitNo description
PROSITE profilePS5015710.2421441IPR007087Zinc finger, C2H2
PfamPF139122.1E-81437IPR007087Zinc finger, C2H2
SMARTSM003550.111436IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.11382109IPR007087Zinc finger, C2H2
SMARTSM003550.02782104IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-683106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.76E-883135No hitNo description
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-484107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.305113135IPR007087Zinc finger, C2H2
PfamPF139129.2E-7113137IPR007087Zinc finger, C2H2
SMARTSM003550.0026113135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.1E-4114136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037289311IPR007087Zinc finger, C2H2
PfamPF139121.7E-11289311IPR007087Zinc finger, C2H2
SMARTSM003550.99289311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280291311IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MELQIQDHQE QKQHLCKLCN KSFSNGKVLG GHMRSHRTSQ NPPKKRKKNS ISGSYSLREN  60
PKKSWKFSAP NGESGENPPQ ENHCKICGKG FESSKALFGH MRHHSGRRKE PSRRCKECNK  120
EFENLKSLTS HMKSHCQSSV IGTDQSEGET LGLLRRKRSR RTRFKLSGSN YPYCSSSSDL  180
IEYSSSSVVD GIEHDVEELA LSLLMLSKGV GHFEEEKDRV TMEFQEVGRY YAGVELGMPK  240
LKDADECEMG FCEIGMKNEL KSLKKGEIED FCMEACEEEV VGEMEEGKHQ CDVCLKVFGS  300
GQALGGHKRA HLLKPNLMEL EEDDENQNQD EEDDDDDDDD DDDDDDDDDE FKIWWKGDDE  360
NEQQQQMVAL VSSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14347KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818700.0LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653348.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1S3C1Z30.0A0A1S3C1Z3_CUCME; zinc finger protein ZAT1-like
STRINGXP_008455588.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-12C2H2-like zinc finger protein