PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.274650.1

Common Name

Csa_4G377720, LOC101212875

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 189aa MW: 21169.8 Da PI: 10.3783

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.274650.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.5	7.9e-15	118	161	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r+rr++kNRe+A rsR+RK+a++ +Le +v L++ N+ L+k+ Cucsa.274650.1 118 RRQRRMIKNRESAARSRARKQAYTNQLEHEVSCLKKTNSWLRKQ 161 69***************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-11	114	182	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.174	116	161	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.15E-20	118	163	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.8E-14	118	161	No hit	No description
SuperFamily	SSF57959	2.11E-11	118	162	No hit	No description
Pfam	PF00170	4.2E-13	118	161	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	121	136	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
AELVHNSSSS PPAAATVSLF LGKRNKDIKP QPDPMAEASA SAEGMDWIHY QRALLIDSKL 60 PVSQAVYNHG SVAGIGLYNM EAMSMTTSAS SNSDFQEGNN CGRKRRQVDD MKEKTIERRQ 120 RRMIKNRESA ARSRARKQAY TNQLEHEVSC LKKTNSWLRK QEEAEGLFSS NPIPMPRHQL 180 RRTSSAFF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681867	1e-154	LN681867.1 Cucumis melo genomic scaffold, anchoredscaffold00013.
GenBank	LN713261	1e-154	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011653821.1	1e-139	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_011653823.1	1e-139	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0A0L0N5	1e-137	A0A0A0L0N5_CUCSA; Uncharacterized protein
STRING	XP_004163678.1	1e-119	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24873	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	6e-29	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Cucsa.274650.1
Entrez Gene	101212875

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]