PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.277160.1

Common Name

Csa_5G276460, LOC105435479

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 158aa MW: 17891.2 Da PI: 9.1993

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.277160.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.2	1e-29	21	72	2	53
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 prlrWtp+LH++Fv a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+ Cucsa.277160.1 21 PRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMM 72 8*************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-28	17	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-13	19	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-21	21	73	IPR006447	Myb domain, plants
Pfam	PF00249	4.8E-7	22	72	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MSSNSCGRNG SVRQYIRSKV PRLRWTPDLH HSFVLAIERL GGHQKATPKL VLQLMDVKGL 60 TISHVKSHLQ MMKQEAHERA EKIKESKCFE LSLSLSLQHH YHHSSSEMSE AISSSSSKLD 120 DNNNNDDYRD SWSWSYGREQ PKIGVNLDLT MALCGSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	22	70	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	22	70	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	22	70	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	22	70	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	22	70	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	22	70	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	22	70	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	22	70	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	22	70	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	22	70	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	22	70	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	22	70	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681904	3e-69	LN681904.1 Cucumis melo genomic scaffold, anchoredscaffold00053.
GenBank	LN713264	3e-69	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011655099.1	4e-44	PREDICTED: putative Myb family transcription factor At1g14600
Refseq	XP_016902518.1	4e-44	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	A0A0A0KSV1	9e-43	A0A0A0KSV1_CUCSA; Uncharacterized protein
TrEMBL	A0A1S4E2S3	1e-42	A0A1S4E2S3_CUCME; putative Myb family transcription factor At1g14600
STRING	XP_008460208.1	3e-43	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5539	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	4e-30	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.277160.1
Entrez Gene	105435479

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]