PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.277250.1
Common NameCsa_5G269890, LOC101211252
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 451aa    MW: 50738.8 Da    PI: 6.819
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.277250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000283453791655
                     HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     i +++  L++++ +      +K + a++L++++ YIk Lq
  Cucsa.277250.1 345 IGDRITALQQIVSPF-----GKTDTASVLTETIGYIKFLQ 379
                     678999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.461329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.64E-5344383No hitNo description
SuperFamilySSF474592.75E-10344395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-9344387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAEECTESSV ATSNSTPSNW WDINHNHNHH HHHHPSLSYN SHWLLQNPNS NSSCEEDVSI  60
STSSFTNASN HLLPHHPSDN NHLWTQVLLN IGNDVELESN EENIEGNFLE TISSRSSMST  120
TGIFESTACS DYLKKMDTSN NDNNNWDDTF QTFNTNNNNN NRLLTSHTHM LQNERFLKLS  180
NLVNRWSIAL PNPDPHLRHL TMDDQHDHLR ASTMPTHEIL EPDGTMPHQG LDPCDSSFLR  240
RSLQNQNYGD YISFNGRLAK PVVGINGSSN NPCFKSSLNL SADSKKQIHQ ICSPTRISGR  300
GSGGVSNEGK KKRSEESSSE TSTKKAKQDN STPSSNKIQQ PKVKIGDRIT ALQQIVSPFG  360
KTDTASVLTE TIGYIKFLQE QVQLLSNPYM KTNSYKDPWQ SLERKEGKGD GKMDLRSRGL  420
CLVPISCTPQ VYRENTGSDY WTPYRGCFYR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819040.0LN681904.1 Cucumis melo genomic scaffold, anchoredscaffold00053.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140441.10.0PREDICTED: transcription factor bHLH111
TrEMBLA0A0A0KQW50.0A0A0A0KQW5_CUCSA; Uncharacterized protein
STRINGXP_004140441.10.0(Cucumis sativus)
STRINGXP_004166044.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101162629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.12e-49bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]