PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.278200.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YB

Protein Properties

Length: 63aa MW: 7157.29 Da PI: 8.9653

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.278200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	51.6	2.4e-16	2	53	7	63
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktin 63 lPianv rimk+++ +++kis++ +qecv efisf ++c+ +r+t+ Cucsa.278200.1 2 QLPIANVERIMKEIVLEKGKISEENSSRMQECVNEFISFA-----QRCHSGNRRTLH 53 59*************************************5.....688888888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.99E-11	1	54	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.0E-13	2	53	IPR009072	Histone-fold
Pfam	PF00808	9.8E-11	2	53	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
LQLPIANVER IMKEIVLEKG KISEENSSRM QECVNEFISF AQRCHSGNRR TLHCKLNTKI 60 AN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135781.1	2e-19	PREDICTED: nuclear transcription factor Y subunit B-4-like
Refseq	XP_008451143.1	4e-18	PREDICTED: beta-galactosidase 15-like
TrEMBL	A0A0A0LZ17	6e-18	A0A0A0LZ17_CUCSA; Uncharacterized protein
TrEMBL	A0A1S3BQ87	8e-17	A0A1S3BQ87_CUCME; Beta-galactosidase
STRING	XP_008451143.1	1e-17	(Cucumis melo)
STRING	XP_004135781.1	9e-19	(Cucumis sativus)
STRING	XP_004157295.1	9e-19	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	9e-13	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Cucsa.278200.1