PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.282100.5
Common NameCsa_1G425940, LOC101203659
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 162aa    MW: 18529.7 Da    PI: 4.8141
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.282100.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.3e-144992654
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     + Er+RR+++N++++ Lr+++P+ +      K++Ka+i + A++YI++L
  Cucsa.282100.5 49 VASERNRRRKLNERLFALRSVVPNiS------KMDKASIIKDAIDYIHDL 92
                    578*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1841107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.8314392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.18E-144697No hitNo description
PfamPF000101.1E-114892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-164998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-1749107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDIIGDDYLN PFGNEIFIGE ELDSWGLEEP FSGDYDSSSP DGSAASKNVA SERNRRRKLN  60
ERLFALRSVV PNISKMDKAS IIKDAIDYIH DLHDQERRIQ AEIYELESGK LKKITGYEFD  120
QDQLPLLLRS KRKKTEQYFS YDSPVSRISP IEVLDCNIHG R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-1448102963Transcription factor MYC2
5gnj_B6e-1448102963Transcription factor MYC2
5gnj_E6e-1448102963Transcription factor MYC2
5gnj_F6e-1448102963Transcription factor MYC2
5gnj_G6e-1448102963Transcription factor MYC2
5gnj_I6e-1448102963Transcription factor MYC2
5gnj_M6e-1448102963Transcription factor MYC2
5gnj_N6e-1448102963Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-104LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-104LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146337.11e-110PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV99e-38BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A0A0LU951e-108A0A0A0LU95_CUCSA; Uncharacterized protein
STRINGXP_004146337.11e-109(Cucumis sativus)
STRINGXP_004161793.11e-109(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.42e-20bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]