PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.283920.1

Common Name

Csa_5G608330

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 372aa MW: 41064.1 Da PI: 6.1564

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.283920.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.1	8.9e-15	178	224	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L +++e++k+L Cucsa.283920.1 178 KSHSEAERRRRERINNHLAKLRSILPST-----TKTDKASLLAEVIEHVKEL 224 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.698	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-12	178	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-14	179	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-14	179	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-13	181	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.38E-5	188	227	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.4E-4	274	325	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MCGEDQEEDH QQQQHQGECS QTIENMFQEQ LLLHQQQLQN NDGDHNNNDH HMMYGVEHHH 60 HGIGRSGLIF PPEVMPPMLQ PWSSLNPFMI PPPPPPPLPT SLSCSSSSYG SLFNRRPPNC 120 LQFAYDGPSS ADHLGRIIST TLGPVVHPGS TAPFGLQAEL GKMSAQEIMD AKALAASKSH 180 SEAERRRRER INNHLAKLRS ILPSTTKTDK ASLLAEVIEH VKELKRQTSI IAETSPIPTE 240 VDEVSVDDAS EQEMMMISNN GSISSSAKFV IKASLCCEDR SDLLPDLIKT LKSLRLTTLK 300 AEITTLGGRL RNVLFVTADE EQQQQHNITS IIQDALKAVI EKTAGDHDSS SANIKRQRTT 360 TTNNINNNNI L*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MCGEDQEEDH QQQQHQGECS QTIENMFQEQ LLLHQQQLQN NDGDHNNNDH HMMYGVEHHH  60
HGIGRSGLIF PPEVMPPMLQ PWSSLNPFMI PPPPPPPLPT SLSCSSSSYG SLFNRRPPNC  120
LQFAYDGPSS ADHLGRIIST TLGPVVHPGS TAPFGLQAEL GKMSAQEIMD AKALAASKSH  180
SEAERRRRER INNHLAKLRS ILPSTTKTDK ASLLAEVIEH VKELKRQTSI IAETSPIPTE  240
VDEVSVDDAS EQEMMMISNN GSISSSAKFV IKASLCCEDR SDLLPDLIKT LKSLRLTTLK  300
AEITTLGGRL RNVLFVTADE EQQQQHNITS IIQDALKAVI EKTAGDHDSS SANIKRQRTT  360
TTNNINNNNI L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	188	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135410.2	0.0	PREDICTED: transcription factor bHLH30, partial
Swissprot	Q9S7Y1	2e-95	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0A0KR14	0.0	A0A0A0KR14_CUCSA; Uncharacterized protein
STRING	XP_004135410.1	0.0	(Cucumis sativus)
STRING	XP_004159323.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	6e-75	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.283920.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]