PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.284270.2

Common Name

Csa_5G607470, LOC101209589

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 561aa MW: 60271.4 Da PI: 6.3966

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.284270.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6.2e-09	377	425	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sLq Cucsa.284270.2 377 NSHSLAERVRREKISERMKFLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 425 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.72E-11	372	429	No hit	No description
SuperFamily	SSF47459	1.07E-16	372	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.459	374	424	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-16	375	441	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-6	377	425	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-10	380	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence Send to blast
MDIGDRDKFR LESSIEDTIN CSNSMSSDWQ FGETTLTTMP TGLVLPGNVD VVRNQDMVGC 60 SSSTASMVES FSSTIWEQSA HCQNLGISNI QGHNISNTSN IIGISKASGC PVSSSSDIDR 120 TLDISWNLSH NMLKGGVYLP NFPGMLPPSL SQLPADSSFI ERAARLSCFS GGNFGGDVGH 180 FNVPDPVGVF SRGMGVIPER WDEIPRNGLG LASGTGGQSQ RNVVNSESSM PVCLTNEHGA 240 TERDSPKNGS PLKLDGRGKL AVDGSANESD EAECSGGDGL GEPCTLEATG KELSTKGLGT 300 RKRKRSGQTE LDQANGPLQQ TTVSPKDDAE TQRKRDQNPN STANKGTGKH GKQASQPSDP 360 PKEEYIHVRA RRGQATNSHS LAERVRREKI SERMKFLQEL VPGCSKVTGK AVMLDEIINY 420 VQSLQRQVEF LSMKLATVNP RLDINIDGVV AKDILQSRVG PLSTLGFSSH MPVACPPPHI 480 SHHELIPTSF PAIGSSEMLR STMNSHMTPR SGGFKNPSQI KNVWEGELQN LVQMSFGMPT 540 PPNCLEVEGS DSSGRTKVEH *

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence Send to blast

MDIGDRDKFR LESSIEDTIN CSNSMSSDWQ FGETTLTTMP TGLVLPGNVD VVRNQDMVGC  60
SSSTASMVES FSSTIWEQSA HCQNLGISNI QGHNISNTSN IIGISKASGC PVSSSSDIDR  120
TLDISWNLSH NMLKGGVYLP NFPGMLPPSL SQLPADSSFI ERAARLSCFS GGNFGGDVGH  180
FNVPDPVGVF SRGMGVIPER WDEIPRNGLG LASGTGGQSQ RNVVNSESSM PVCLTNEHGA  240
TERDSPKNGS PLKLDGRGKL AVDGSANESD EAECSGGDGL GEPCTLEATG KELSTKGLGT  300
RKRKRSGQTE LDQANGPLQQ TTVSPKDDAE TQRKRDQNPN STANKGTGKH GKQASQPSDP  360
PKEEYIHVRA RRGQATNSHS LAERVRREKI SERMKFLQEL VPGCSKVTGK AVMLDEIINY  420
VQSLQRQVEF LSMKLATVNP RLDINIDGVV AKDILQSRVG PLSTLGFSSH MPVACPPPHI  480
SHHELIPTSF PAIGSSEMLR STMNSHMTPR SGGFKNPSQI KNVWEGELQN LVQMSFGMPT  540
PPNCLEVEGS DSSGRTKVEH *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011655728.1	0.0	PREDICTED: transcription factor bHLH49 isoform X2
TrEMBL	A0A0A0KR06	0.0	A0A0A0KR06_CUCSA; Uncharacterized protein
STRING	XP_004135136.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-111	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.284270.2
Entrez Gene	101209589

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]