PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.284590.1
Common NameCsa_5G606610, LOC101221515
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 385aa    MW: 43606.8 Da    PI: 9.9893
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.284590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035323345123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kCp+C k F++   L  H r+H
  Cucsa.284590.1 323 HKCPICFKAFKSGQALGGHKRSH 345
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-7636No hitNo description
Gene3DG3DSA:3.30.160.608.6E-6735IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.3936IPR007087Zinc finger, C2H2
SMARTSM003550.28931IPR015880Zinc finger, C2H2-like
PfamPF139120.0044931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.59697124IPR007087Zinc finger, C2H2
SMARTSM003554.297119IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-499122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
PfamPF139120.09599119IPR007087Zinc finger, C2H2
SuperFamilySSF576678.67E-5320346No hitNo description
PROSITE profilePS501579.494323345IPR007087Zinc finger, C2H2
SMARTSM003550.088323345IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-9323345IPR007087Zinc finger, C2H2
PROSITE patternPS000280325345IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEVSRENKFV CNFCHKSFTC GKSLGGHIRI HKNEKSPRVA GKERSSMLKF QVPKERRRSK  60
RDSESEVGNG NSGYGLRENP KITQRFADSG FSSRQEKFCR ECGQGFQSSE ALSWHLACHT  120
GNERENRRFE YNYGITHHRS DIPERVREAA MCLMMMSKAP RFSGFEDNDS AAESSDSKSS  180
SRYFRESETS ASNSNGGGLE MKEVTGRINK LEVYECGGGE NSDSENFRKE VCKRVKLKVS  240
VHRALMDEEY KKPGFKFGVR VGRESGDILK NSMKTKKNDD QVHASSYKYE LRKRLKNGSY  300
SPDLWEGSSK KIPKKKLGPK RKHKCPICFK AFKSGQALGG HKRSHVVGSL EDASIVTRQE  360
SNGMAGLFDL NVPAPMEEEE NGRWX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135439.10.0PREDICTED: zinc finger protein 761-like
TrEMBLA0A0A0KQT00.0A0A0A0KQT0_CUCSA; Uncharacterized protein
STRINGXP_004135439.10.0(Cucumis sativus)
STRINGXP_004155375.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-22C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]