PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.285120.1
Common NameCsa_5G605050, LOC101205554
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 391aa    MW: 44251.8 Da    PI: 8.0623
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.285120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.54.4e-52141411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     + pGfrFhPtdeelv +yLk+k+++k+l + e ik++diyk++PwdLpk   ++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+
  Cucsa.285120.1  14 MLPGFRFHPTDEELVGFYLKRKIQQKPLLI-ELIKQIDIYKYDPWDLPKLGGTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 107
                     579************************999.89***************87778999**************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Cucsa.285120.1 108 dGTKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 141
                     56667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5712172IPR003441NAC domain
PROSITE profilePS5100556.8314172IPR003441NAC domain
PfamPF023659.8E-2616141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEERNDSDKV EEVMLPGFRF HPTDEELVGF YLKRKIQQKP LLIELIKQID IYKYDPWDLP  60
KLGGTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV  120
FYKGRAAKGV KTDWMMHEFR LPSLNDPLPT KRLIDKPIPP NDSWAICRIF KKTNSTAQRA  180
LSLSSNNMIP PLLSETNTSD DNNNNHHHNP YNNFPTKFPT LLPSFESHQY SSISNNNITY  240
PNFDFVASCK PFNSQIISNN RSFSHLPILA EPPPPPSNTT DQEKCRVDLS SILLNMSSSV  300
LGDFGIMKPN DTVDLHAQHQ QFMNNYPQTF SHDQMQGAAS DQFVGAIRSN VIGSYPLNIS  360
DLGKPNFIWD SSSSCPSEVS TSLSTTNCYT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-5251797171NO APICAL MERISTEM PROTEIN
1ut4_B5e-5251797171NO APICAL MERISTEM PROTEIN
1ut7_A5e-5251797171NO APICAL MERISTEM PROTEIN
1ut7_B5e-5251797171NO APICAL MERISTEM PROTEIN
3swm_A6e-52517910174NAC domain-containing protein 19
3swm_B6e-52517910174NAC domain-containing protein 19
3swm_C6e-52517910174NAC domain-containing protein 19
3swm_D6e-52517910174NAC domain-containing protein 19
3swp_A6e-52517910174NAC domain-containing protein 19
3swp_B6e-52517910174NAC domain-containing protein 19
3swp_C6e-52517910174NAC domain-containing protein 19
3swp_D6e-52517910174NAC domain-containing protein 19
4dul_A5e-5251797171NAC domain-containing protein 19
4dul_B5e-5251797171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655679.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-104FEZ_ARATH; Protein FEZ
TrEMBLA0A0A0KVX80.0A0A0A0KVX8_CUCSA; Uncharacterized protein
STRINGXP_004155390.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-105NAC family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]