PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.285730.1
Common NameCsa_5G603380
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 258aa    MW: 28947.7 Da    PI: 5.8813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.285730.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00013105127123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k F+++  L  H++ H
  Cucsa.285730.1 105 FECQYCLKEFTNSQALGGHQNAH 127
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-5103132No hitNo description
PROSITE profilePS5015711.406105132IPR007087Zinc finger, C2H2
PfamPF139129.6E-6105129IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.8E-4105131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MMGKDSFCCN FDPEKEGGLF GGGCCMEKKV KLFGIELNPS NNFCNNFHDQ GDHESVNSST  60
TTATTVCFDQ RSSTNQQEQE EDDQEEAADI VVISNNNNNK KATKFECQYC LKEFTNSQAL  120
GGHQNAHKKE RLKKKKMQLQ ARKATLTYYL QSNSNNNNHF LYDYDPNSSS PNSSFFISDD  180
YYYNSSQISF NQNDAGLIHF DSSLPFLPQQ QRQPFFTFTP PDMSSRRPST NPVVFHSSSS  240
SSSPASCKSL DLQLGLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135ERLKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446260.11e-127PREDICTED: zinc finger protein 5
TrEMBLA0A0A0KVQ60.0A0A0A0KVQ6_CUCSA; Uncharacterized protein
STRINGXP_008446260.11e-127(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.12e-13zinc finger protein 5
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]