PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.289120.1
Common NameCsa_1G573650, LOC101216137
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 379aa    MW: 41914.7 Da    PI: 9.5159
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.289120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.16.8e-17199254358
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                     + kr rr+ +NRe+ArrsR+RK+a + eLe+ v+eL  eN++L k+ + +++++ +
  Cucsa.289120.1 199 SAKRIRRMLSNRESARRSRKRKQAHLTELETQVAELRHENSTLLKRFSDISQKYNE 254
                     78********************************************9999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.6E-13195253No hitNo description
SMARTSM003383.4E-18197261IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.484199254IPR004827Basic-leucine zipper domain
PfamPF001703.2E-14199253IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.19E-12201251No hitNo description
CDDcd147022.60E-16202253No hitNo description
PROSITE patternPS000360204219IPR004827Basic-leucine zipper domain
PfamPF124982.2E-16268315IPR020983Basic leucine-zipper, C-terminal
PfamPF124983.1E-10315365IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MMDRVLFSVD GISDQFWPSQ DPPEESSKLN RSASEWSFRR FLQEAASVSD SSVSPPPASP  60
SNAVEIKESG ERLKQSKEKQ SNRNNGGIQK ERKKSSGGDS EEYRAFLKSK LNLACAAVAM  120
CRGSFRKSRD SCASSTLAQN MSHLPSQSPS KGICCSPCVQ KRDGIQVSSA NISSSREQTD  180
EEDDVEGEND MNEQMDPASA KRIRRMLSNR ESARRSRKRK QAHLTELETQ VAELRHENST  240
LLKRFSDISQ KYNEAAVNNR VLKADLETLR AKVQMAEETV KRITGTKSMF HAMSEVSSIS  300
IQSFEGSPSE ISTDAHNSHI ADISSANIQK NSLEMATVPR NKMARTASLR RVASLEHLQK  360
RIRGSSSICH PSGKGDQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213219RRSRKRK
2213220RRSRKRKQ
3215220SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818061e-163LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-163LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135652.10.0PREDICTED: light-inducible protein CPRF2-like
SwissprotQ990904e-94CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A0A0M1N80.0A0A0A0M1N8_CUCSA; Uncharacterized protein
STRINGXP_004135652.10.0(Cucumis sativus)
STRINGXP_004168471.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.26e-71bZIP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]