PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.291770.1
Common NameCsa_1G690370, LOC101211010
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 619aa    MW: 71109.5 Da    PI: 6.5092
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.291770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.73.5e-14124186168
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                     +W+++e laL+++r+++e+ + ++      We+vs+k+ e gf+r++ +Ckek+e+ ++++  i+ ++
  Cucsa.291770.1 124 QWSNDELLALLRIRSNIENCFPES-----TWEHVSRKLGEVGFRRTADKCKEKFEEESRYFNHINYNK 186
                     7******************99998.....9*******************************9988655 PP
2trihelix95.45.4e-30487582186
        trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                     rW+++evlaL+++r +m ++  +++           lk+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+q
  Cucsa.291770.1 487 RWPRDEVLALVNVRCKMYNNTTTTNnqdesqsggasLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQ 580
                     8**************888888876445566666677*********************************************8.9999******** PP

        trihelix  85 le 86 
                     l 
  Cucsa.291770.1 581 LS 582
                     95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071722121178IPR001005SANT/Myb domain
PfamPF138377.8E-9123184No hitNo description
PROSITE profilePS500906.481125176IPR017877Myb-like domain
SMARTSM007170.52331557IPR001005SANT/Myb domain
PfamPF138374.6E-18486582No hitNo description
CDDcd122032.41E-22486562No hitNo description
PROSITE profilePS500906.179487555IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MFEGGSVSEQ LHQFLTPRTT PPPPNSNSLP LIPLNFALHS PNFNFHPFDS YNATSTAHHH  60
HQIHLPHHLL HHQSPNPHGD DKNDVKTTTT AAGSSLQVGV DLEVGRENSR SILMEDHHII  120
HHDQWSNDEL LALLRIRSNI ENCFPESTWE HVSRKLGEVG FRRTADKCKE KFEEESRYFN  180
HINYNKNCRF LTHELNYNHH PNQDQDQDHL LLIHEGNGKP DDGGPTLVVV PEEGEEENQD  240
KDGELHDDDE EEDLRNDEMR PGRNEEERNE SSRSSSCQKS KKKRKMMRQK EFELLKGYCE  300
EIVKKMMIQQ EEIHSKLLQD MLKKEEEKVA KEEYWKKEQM ERLHKELEVM AHEQAIAGDR  360
QATIIEILNQ ITNSTTLISS SHESKKDLQN LLQSLNNYNN NNNIPNSTPS SSSLIQCQTS  420
SSPNKKPPHE NSNSFTSQND PIKNPKNNPC LSTQILAPQD PNSFINNHPN PKSKEKLDHE  480
SEDLGKRWPR DEVLALVNVR CKMYNNTTTT NNQDESQSGG ASLKAPLWER ISQGMLQLGY  540
KRSAKRCKEK WENINKYFRK TKDVNKKRSL DSRTCPYFHQ LSTLYNQGGG NNNPLENCPN  600
VSSENHSDHS ENHLATSS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818110.0LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142523.10.0PREDICTED: trihelix transcription factor GTL2
TrEMBLA0A0A0M3J30.0A0A0A0M3J3_CUCSA; Uncharacterized protein
STRINGXP_004142523.10.0(Cucumis sativus)
STRINGXP_004155698.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-61Trihelix family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]