PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.300100.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 242aa    MW: 26336.2 Da    PI: 4.7212
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.300100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-183886355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +gr++AeIrdps+   + r++lg+f+tae+Aa a+++a+++l+g
  Cucsa.300100.1 38 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEDAAIAYDRAARSLRG 86
                    67******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.2973794IPR001471AP2/ERF domain
CDDcd000181.09E-293793No hitNo description
SMARTSM003807.8E-3437100IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-213895IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-283894IPR001471AP2/ERF domain
PRINTSPR003676.9E-83849IPR001471AP2/ERF domain
PfamPF008472.9E-104086IPR001471AP2/ERF domain
PRINTSPR003676.9E-86076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
QTKHIKTFFF SYTNESIALQ TQKKAPPPPP AESTPHRFLG VRRRPWGRYA AEIRDPSTKE  60
RHWLGTFDTA EDAAIAYDRA ARSLRGSLAR TNFLYSDSPP PPPPLYSASI HHPNQPPLFL  120
PLLPPTPPSL LHQFPPAGDS LSGIISGDYD ASAELPPFPP AISSESVDCD YNNYGVMESQ  180
NVGFECFDQS SIGIGSCLGF DSSSDYIYNP MLGSMPTVSD VGAGDFESPA GNFYLPQSSD  240
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-193893359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-193893662ATERF1
3gcc_A5e-193893662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151396.11e-156PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A1S3AU891e-108A0A1S3AU89_CUCME; ethylene-responsive transcription factor LEP
STRINGXP_004151396.11e-155(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-21ERF family protein