PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.300810.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 72aa MW: 7652.94 Da PI: 7.8326

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.300810.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	30.6	9.3e-10	20	51	1	32
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfan 32 +C Ck+l ++C+++C+lapyfp ++p kf Cucsa.300810.1 20 PCLECKILHQRCVEKCILAPYFPPSEPLKFTL 51 699***********************999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.855	19	71	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-8	20	51	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 72 aa Download sequence Send to blast
SPSSSPSPSP IVQASVVVSP CLECKILHQR CVEKCILAPY FPPSEPLKFT LLTASSALAT 60 SSNCLWYFLN P*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022949099.1	6e-15	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	3e-12	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	4e-12	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A2Z7BKX0	8e-14	A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like
STRING	XP_008463550.1	9e-14	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-11	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	Cucsa.300810.1