PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.301800.1
Common NameCsa_5G162030, LOC101211862
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 170aa    MW: 19261.6 Da    PI: 10.6474
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.301800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00048426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C++ F++   L  H++ H
  Cucsa.301800.1  4 HKCKLCSRAFTNGRALGGHMKAH 26
                    79******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.3E-7427IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889426IPR007087Zinc finger, C2H2
SuperFamilySSF576675.66E-5428No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MVSHKCKLCS RAFTNGRALG GHMKAHLTAP AAALPFPPPK PPPSPSSSSS SDHDESTLYE  60
LRGNSKGRNF RFSDPVFNIV LQDRESETES KNPTRKRSKR WRKPEVEPEP ASSVSDASPE  120
EDLAVCLMML SRDRWIKNQN HNERRSSFEE LGSKIRVKKG IRRKKKCEKX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153164KIRVKKGIRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818951e-142LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132631e-142LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152430.11e-121PREDICTED: zinc finger protein ZAT9 isoform X1
TrEMBLA0A0A0KMX81e-119A0A0A0KMX8_CUCSA; Uncharacterized protein
STRINGXP_004169199.11e-120(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16610.11e-24C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]