PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.302120.1
Common NameCsa_5G160180, LOC101221404
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 330aa    MW: 37861.7 Da    PI: 6.8775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.302120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.63.9e-5671371129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     +ppGfrFhPtdeelv++yL+kkv++k+++l ++ik+vd+y++ePwdL++    + +++++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+
  Cucsa.302120.1   7 VPPGFRFHPTDEELVDYYLRKKVASKRIDL-DIIKDVDLYRIEPWDLQElcklAGSEDQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKA 100
                     69****************************.99**************9545433333667*********************************** PP

             NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +++ +++lvg++ktLvfykgrap+g+k+dW+mheyrle
  Cucsa.302120.1 101 IYA-RHSLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137
                     ***.889*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-615157IPR003441NAC domain
PROSITE profilePS5100560.0177157IPR003441NAC domain
PfamPF023656.4E-298136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MNCIPHVPPG FRFHPTDEEL VDYYLRKKVA SKRIDLDIIK DVDLYRIEPW DLQELCKLAG  60
SEDQNEWYFF SHKDKKYPTG TRTNRATKAG FWKATGRDKA IYARHSLVGM RKTLVFYKGR  120
APNGQKSDWI MHEYRLETNE NATPQEEGWV VCRVFKKRMP TVRKAGDYGS PCWYDDQVSF  180
MPELDSPTTQ IFHHPAYPCK QELELHFHAP PHDQVFLQLP HLESPKIPTS SATNSLLPYA  240
YDRDTGVTPL YGVEHTVDHV TDWRVMEKFV ASQLSNDQDL KQSNYSHGAI FQVPPNSGGA  300
ATVSECDRKD MAPEFALASP SSCQVDMWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-48615814169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147614.10.0PREDICTED: NAC domain-containing protein 7
SwissprotQ9FWX21e-138NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A0A0KKJ40.0A0A0A0KKJ4_CUCSA; Uncharacterized protein
STRINGXP_004147614.10.0(Cucumis sativus)
STRINGXP_004167328.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-141NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]