PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.302570.1

Common Name

Csa_5G157230

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 230aa MW: 26388 Da PI: 9.881

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.302570.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	82	141	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC..........TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas.......kapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ + ++ Lr+llP + + +++K s + ++v+YI+++q Cucsa.302570.1 82 IIHRDVERQRRQEMSTLYAALRSLLPVEYlkvkligASSNGKRSICDHMHETVKYIQHMQ 141 5699*********************777***************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-12	77	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.87E-7	78	145	No hit	No description
PROSITE profile	PS50888	12.189	79	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-11	82	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-8	83	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.4E-4	85	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MDLDCIQSPF PFDQVDELFP LPSLSPIHLS VADHPPLIAS INNTNRNISE KPKKGRRRKS 60 PNTSADIEDE NPNPNEHKKK KIIHRDVERQ RRQEMSTLYA ALRSLLPVEY LKVKLIGASS 120 NGKRSICDHM HETVKYIQHM QTKIQMLRNK RDELKKNIED GEDSRNITTI ETLNSSKRDS 180 VLVMPRSCGG VQILLDTATH HRLPLSNLIK FLITQNLQII SCHSTRKNDX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM655852	0.0	KM655852.1 Cucumis sativus bHLH transcription factor (Csa5G157230) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001295841.1	1e-157	transcription factor bHLH118-like
TrEMBL	A0A0A0KMQ4	1e-157	A0A0A0KMQ4_CUCSA; Uncharacterized protein
STRING	XP_004164316.1	1e-158	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	1e-21	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.302570.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]