PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.302580.1

Common Name

Csa_5G157220, LOC101216674

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 261aa MW: 29813.7 Da PI: 5.681

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.302580.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1.1e-11	81	133	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ s +++Lr+llP ++K s + ++v+YI+++q Cucsa.302580.1 81 KKIMHRDVERQRRQEMSSLYSTLRSLLPIeY---LKGKRSICDHMHETVKYIRYMQ 133 5789***********************77...9*****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.14E-13	79	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.32E-10	79	137	No hit	No description
PROSITE profile	PS50888	13.141	80	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-8	82	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-9	82	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-4	86	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MDLNNVESPF LFDDLGDELL PLPSLSCIDN CFVPQFPSIL ENNNNSTVSP TLKNSRRKKP 60 VPANTSDDKD DENNSNEHKK KKIMHRDVER QRRQEMSSLY STLRSLLPIE YLKGKRSICD 120 HMHETVKYIR YMQSKIQELC DKRDELKKLQ SNNQNPGMVE TETLQSTKRD KVVVRARDGS 180 GGIQVILDTP TQHRLTLSNI LEALIDQGFE ILSCSSNKLN DRFLHTIESQ PAVFTDTNSP 240 LIDISDLQYM LANLEYCPLD *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681895	0.0	LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147594.1	0.0	PREDICTED: transcription factor bHLH36-like
TrEMBL	A0A0A0KKN9	0.0	A0A0A0KKN9_CUCSA; Uncharacterized protein
STRING	XP_004164317.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	4e-31	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.302580.1
Entrez Gene	101216674

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]