PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.302590.1

Common Name

Csa5G156220, Csa_5G156220, LOC101221467

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 252aa MW: 28402.2 Da PI: 7.5438

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.302590.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	75	125	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ s + +Lr+llP ++K s ++ +++v YI+++q Cucsa.302590.1 75 IIHRDVERQRRQEMSSLYTTLRSLLPLeY---LKGKRSISDHMQETVSYIQHMQ 125 5699*********************77...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.97E-12	71	129	No hit	No description
SuperFamily	SSF47459	2.62E-14	71	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.471	72	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	76	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-10	76	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-6	78	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MEMFNAESPF SFDVGEDLVP LPSLPSSSVI SPPLDNYGNR VSQKPKNGRR KKPLPNTCND 60 DGGDENHDEQ KKKKIIHRDV ERQRRQEMSS LYTTLRSLLP LEYLKGKRSI SDHMQETVSY 120 IQHMQRRIQQ LKDKRGTLRE LASQTTVAIA GTTETLNSSE RASAVVRAKD GIGIQVVLDT 180 ATKQRLPLSI FVQALVSEGL EILNCISNRL NERFIHTIEC QPLLNDDGCY PTIDVSVLQH 240 KLANLEYYPL D*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM655851	0.0	KM655851.1 Cucumis sativus bHLH transcription factor (Csa5G156220) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001295816.1	0.0	transcription factor bHLH118-like
TrEMBL	A0A097IYN6	0.0	A0A097IYN6_CUCSA; BHLH transcription factor
STRING	XP_004144002.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.302590.1
Entrez Gene	101221467

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Shang Y, et al. Plant science. Biosynthesis, regulation, and domestication of bitterness in cucumber. Science, 2014. 346(6213): p. 1084-8 [PMID:25430763]