PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.303720.1
Common NameCsa_5G151530, LOC101210444
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 319aa    MW: 35696.4 Da    PI: 4.6281
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.303720.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.6e-19113163155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Cucsa.303720.1 113 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 163
                     59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.78E-33113170No hitNo description
Gene3DG3DSA:3.30.730.105.2E-30114172IPR001471AP2/ERF domain
PROSITE profilePS5103223.578114171IPR001471AP2/ERF domain
SMARTSM003804.6E-39114177IPR001471AP2/ERF domain
PfamPF008471.9E-12114163IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21114172IPR016177DNA-binding domain
PRINTSPR003673.3E-10115126IPR001471AP2/ERF domain
PRINTSPR003673.3E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDLDSVFSFP IKYTEHLNHV KLTSMPDIRP RVVRISVTDG DATDSSSDDE SEMFGRHRVK  60
KFVNEISIEP SCSGEGNRIW GSNRSARTGQ RRSTGKCGVP SRNRRSAKVS TGKKFRGVRQ  120
RPWGKWAAEI RDPLRRVRLW LGTYDTAEEA AMVYDNAAIQ LRGPDALTNF TTQQSKSFEE  180
KCSGYNSGEE SNNNICSPTS VLRCPSPPIE EAQSQIPSEL DNSCVSENFS SEFSDFSSCS  240
DTFIPDDIFA FETSIPTLFD EMGLQNQTNF LSNDSFFNSV FHSPIEEIGF RFDYPSPPPD  300
DFFQDFSDVF GSDPLVAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21110170162ATERF1
3gcc_A4e-21110170162ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143957.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLA0A0A0KNS80.0A0A0A0KNS8_CUCSA; Uncharacterized protein
STRINGXP_004143957.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-42cytokinin response factor 4
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]