PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.306530.1

Common Name

Csa_3G743410, LOC101217263

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 259aa MW: 28536.8 Da PI: 7.8035

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.306530.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00066	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Cucsa.306530.1 89 YQCKTCDRCFPSFQALGGHRASH 111 9***********99999998887 PP
2	zf-C2H2	14	0.00015	179	201	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Cucsa.306530.1 179 HECSICGAEFSSGQALGGHMRRH 201 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.22E-5	88	117	No hit	No description
Pfam	PF13912	3.3E-10	89	113	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.847	89	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.077	89	111	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.83E-6	175	202	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.2E-4	177	201	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	3.2E-13	178	203	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	179	201	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.868	179	206	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	181	201	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MAETPDENQA QIIKGKRTKR LRPSSVSSTS SSADCSSSSA GLTEEEEEDQ DLANCLILLA 60 QGRSRITEGC SSVFVQQKLV AANESLFLYQ CKTCDRCFPS FQALGGHRAS HKKPKFFNNI 120 TANSVEQQHQ QQQQQHHHHH HQDNNFTTSN SIQLSLQLST ASRPPPPPTA GDLIKSKVHE 180 CSICGAEFSS GQALGGHMRR HRALTATTTR PITTTPQFIK KERNMLELDL NLPAPEDDRH 240 RPPVAVFSTA SPLVDCHY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652845.1	1e-154	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A0A0LDR8	1e-152	A0A0A0LDR8_CUCSA; Uncharacterized protein
STRING	XP_004161279.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-39	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.306530.1
Entrez Gene	101217263

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]