PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.306990.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 495aa    MW: 54010.5 Da    PI: 10.6019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.306990.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056789123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  Cucsa.306990.1 67 FICEICNKGFQRDQNLQLHRRGH 89
                    89*******************88 PP
2zf-C2H212.10.00058144166123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  Cucsa.306990.1 144 WKCDKCSKKYAVQSDWKAHSKTC 166
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.58E-76689No hitNo description
Gene3DG3DSA:3.30.160.601.3E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121715.9E-56789IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8456789IPR007087Zinc finger, C2H2
SMARTSM003550.0226789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355100109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.58E-7139164No hitNo description
SMARTSM00355150144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MSTNPFSLLS STTTSFPHPQ DANPNPNPKP KPSAAAAKKK RNLPGTPDPD AEVIALSPKS  60
LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTN KEPIKKKVYI CPEKTCVHHD  120
PSRALGDLTG IKKHFSRKHG EKKWKCDKCS KKYAVQSDWK AHSKTCGTRE YKCDCGTLFS  180
RKDSFITHRA FCDALAEESA RITTVSATNI LNNLRNDSNN INLLHQQADH HQSLIDHHQS  240
LGDISGLSQF TNHSDHFLRD FEDHQQKNRS PLSLWLNQAS AENAINSNNS ISNFFGASSS  300
SSNLFGSITE NGLSMLPVME KEDVENKGSN NNFSKATSSS AAALLSGQSS QSVVSSSPMS  360
ATALLQKAAL MGSTRSGNNN NTPLFGSGAF GVMSSSSSLS SSSSSNAWTN EGLPRSRRRR  420
STPTAIPSTR ASKIHHHKLN NGTKPICRQP LKSHHQKPSN LIKNIGKAKP NFFFTVQGGG  480
NGQKGPTAGP PVNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-38140209372Zinc finger protein JACKDAW
5b3h_F5e-38140209372Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137968.10.0PREDICTED: protein indeterminate-domain 9
TrEMBLA0A0A0LDZ10.0A0A0A0LDZ1_CUCSA; Uncharacterized protein
STRINGXP_004137968.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-100C2H2-like zinc finger protein