PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.307210.1

Common Name

Csa_3G736780, LOC101212699

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YB

Protein Properties

Length: 174aa MW: 18763.9 Da PI: 6.5184

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.307210.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	186.1	2.6e-58	24	120	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plk+yl+kyre+eg Cucsa.307210.1 24 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEG 118 69********************************************************************************************* PP NF-YB 96 ek 97 ++ Cucsa.307210.1 119 DT 120 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.7E-56	19	136	IPR009072	Histone-fold
SuperFamily	SSF47113	5.69E-41	27	135	IPR009072	Histone-fold
Pfam	PF00808	2.0E-28	30	94	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.0E-21	58	76	No hit	No description
PROSITE pattern	PS00685	0	61	77	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.0E-21	77	95	No hit	No description
PRINTS	PR00615	3.0E-21	96	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MADAPASPGG GSHESGEQSP RSNVREQDRF LPIANISRIM KKALPANGKI AKDAKETVQE 60 CVSEFISFIT SEASDKCQRE KRKTINGDDL LWAMATLGFE DYIDPLKTYL TKYRETEGDT 120 KGSAKGGDGS AKKEAHPTPI PQMAHQGSFS QGVNYASSQS QAQHLMVPMQ GTD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-47	23	115	1	93	NF-YB
4awl_B	2e-47	23	115	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-47	23	115	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B	1e-47	24	115	1	92	Transcription factor HapC (Eurofung)
4g92_B	1e-47	24	115	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG003875	0.0	HG003875.1 Cucumis sativus mRNA for nuclear transcription factor Y subunit B-8-like, cultivar Summer Green.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137802.1	1e-128	PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
Refseq	XP_008442637.1	1e-128	PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
Swissprot	Q8VYK4	1e-85	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0A0LAB9	1e-127	A0A0A0LAB9_CUCSA; Uncharacterized protein
TrEMBL	A0A1S3B5N5	1e-127	A0A1S3B5N5_CUCME; nuclear transcription factor Y subunit B-1 isoform X1
STRING	XP_008442637.1	1e-127	(Cucumis melo)
STRING	XP_004137802.1	1e-127	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2545	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	7e-76	nuclear factor Y, subunit B8

Link Out ? help Back to Top
Phytozome	Cucsa.307210.1
Entrez Gene	101212699

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]